Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2715g00005 ATGAAGGTTCCAATGGAGGAAAAACCATTCCCTGCATGGTCATGGTCTGTTGAACAGTGTTTGAAAGAGTATGGAGTGAAACTGGACAAAGGTCTGAGTACTCATGAGGTTCAGAAGCTGCGCGAGAAGTATGGTTGGAATGAGTTAGCAAAGGAGAAAGGGAAGCCGTTGTGGGAACTAGTGTTGGAACAATTTGATGACATGCTGGTTAAGATACTTTTGGCTGCAGCCTTCTTATCATTTCTTTTGGCTTATTTTCACGGAAGTGACTCTGGGAAGTCTGGATTTGATGCATATGTGGAGCCACTTGTGATCATTTTGATTTTGGTCCTTAATGCCATTGTTGGAGTTTGGCAAGAGAACAATGCTGAGAAGGCTCTTGAAGCCCTCAAAGAGTTGCAGAGCGAGTCTGGGAAAGTGTTAAGGGATGGCTATTTTGTGCCTGATTTGCCTGCTAGAGAGCTTATTCCTGGTGATATTGTGGAGTTGAATGTTGGAGATAAGGTCCCAGCTGATATGAGAGTTGCGGCTTTGAAAACCTCAACATTGAGGGTTGAACAAAGTTCTTTAACTGGAGAAGCAATGCCAGTTCTCAAGGGGACAAGTCCTGTTTTCTTGGAAGACTGTGAGTTGCAGGCTAAAGAAAACATGGTATTTGCAGGCACCACTGTTGTCAATGGGAGTTGTGTGTGTATCGTTATCACCACAGGAATGGACACTGAAATTGGAAAGATACAGAAGCAGATACACGAGGCTTCTCAAGAGGACAGTGACACCCCTTTGAAGAAGAAGCTGGATGAGTTTGGTAACAGGCTTACCACTGCGATTGGTCTAGTTTGTCTCATTGTTTGGGCTATCAACTACAAGAATTTCATTTCTTGGGATGTTGTGGATGGATGGCCCTCAAACGTAAAATTTTCATTCCAAAAGTGTACCTACTATTTCAAAATTGCCGTTGCCCTTGCAGTGGCTGCAATCCCTGAAGGCCTTCCTGCTGTTATCACAACTTGTTTAGCACTCGGTACACGGAAAATGGCTCAAAAGAATGCAATTGTGAGAAAGCTTCCAAGTGTGGAAACTTTGGGATGTACTACTGTGATATGCTCAGACAAAACTGGCACTTTGACAACAAATCAGATGGCTGTGACACAGTTCTTTACTTTGGGAGGGAAAACCACTGCTTCTCGACTCATTAGTGTTGAAGGCACAACTTATGATCCCAAAGATGGGGGAATTGTTGATTGGGGATGCTACAACATGGATGCTAATTTGCAAGTCATGGCTGAAATATGTGCTGTTTGTAATGATGCTGGGATTTACTTTGATGGTCGCCTTTTTAGAGCCACAGGTTTGCCTACCGAAGCTGCTCTCAAAGTGTTGGTTGAAAAGATGGGAGTTCCAGATGTGAAGTCAAGGAGCAAAACTTGTGATAATGCACAACTTGCTGCAAACAACTTGATGGATGTCAACACTGTGGTGAAGTTAGGATGTTGTGAGTGGTGGAATAAAAGATCCAAAAGGGTAGCTACATTGGAGTTTGATCGCATTCGGAAGTCAATGAGTGTTATTGTTCGTGAACCAAATGGTCAAAATCGGCTTCTTGTCAAGGGTGCTGTTGAGAGTTTACTGGAGCGTAGTTCACACGTCCAACTTGCTGATGGATCTCTGGTTCCAATAGATAACCAATGTAGAGAACTACTTCTTCAAAGACTCCAGGAGATGAGTTCGAAGGGATTGCGTTGCTTGGGTTTTTCATACAAAGATGAATTGGGAGAATTTTCAGACTATTATGCTGATACTCATCCTGCTCACAAGAAGTTGCTTGAACCAACTTACTATTCATCCATTGAAAGTGATCTAATTTTTGTTGGCATTGTTGGCTTAAGAGATCCTCCTCGTGAGGAAGTTCACAAAGCAATCGAGGATTGTAAGGAAGCTGGCATTAGAGTTATGGTAATAACTGGAGATAATAAGTCAACAGCAGAGGCTATTTGTAGAGAAATCAGATTGTTCTCTGAAGATGAGGATCTCAAAGGGCAAAGTTTGACCGGTAAGGAATTCATCACTCTTCCTCATTCAGAACAAGTTAAAATATTGTTGAGACCTGGAGGAAAGGTTTTCTCCCGAGCTGAACCTAGACACAAGCAAGAAATTGTTAGACTACTGAAGGAAATGGGGGAGATCGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTAGCCGACATAGGGATTGCCATGGGCATAGCTGGGACAGAGGTTGCAAAAGAAGCATCAGATATGGTGCTTGCAGATGACAATTTTAGTACCATAGTTTCAGCTGTAGCTGAGGGTCGTTCTATTTATAATAACATGAAGTCATTTATAAGGTACATGATATCATCCAATGTTGGGGAAGTAATATCCATATTCTTGACAGCTGCATTGGGGATCCCAGAATGCATGATACCAGTGCAACTTCTATGGGTGAATTTGGTTACTGATGGTCCACCTGCAACAGCTCTTGGTTTTAACCCTGCTGATGTTGATATCATGCAGAAGCCACCTCGCAGAAGTGATGATGCATTAATAAGTTCTTGGGTTCTTTTCCGTTATCTGGTAATTGGTTCCTATGTGGGACTAGCAACAGTTGGCATTTTTGTTTTGTGGTACACTCAAGCATCTTTTCTTGGAATCAATCTTGTGAGTGATGGTCACACAATTATAGAATTCTCCCAACTTCGAAACTGGGGGGAGTGTCCCTCATGGTCTAATTTCACTGTTGCTCCATTTAATGTTGGAGGAGGTCGCTTGATCACCTTTTCAAATCCTTGTGACTATTTCTCAGTTGGCAAAGTAAAGGCCATGACACTCTCTCTCTCAGTCTTGGTGGCAATTGAGATGTTTAACTCTTTGAATGCCCTCTCAGAAGATAATAGCTTGAGGAAACTACCACCTTGGAGGAACCCTTGGCTTTTGGTAGCCATGTCAATATCATTTGGACTCCATTGCCTCATACTCTACACCCCATTCCTTGCAGAAGTGTTTGGAGTTATTCCTCTTACTTTTAATGAGTGGTTTATGGTCCTTTTAATATCAGCACCTGTTATTCTTATTGACGAGATTCTGAAGTTAGTAGCGAGAAGTCAAAGGAGGTTGACAAAAGAGAAAAAGGCATGA 3171 0.4238 MKVPMEEKPFPAWSWSVEQCLKEYGVKLDKGLSTHEVQKLREKYGWNELAKEKGKPLWELVLEQFDDMLVKILLAAAFLSFLLAYFHGSDSGKSGFDAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQSESGKVLRDGYFVPDLPARELIPGDIVELNVGDKVPADMRVAALKTSTLRVEQSSLTGEAMPVLKGTSPVFLEDCELQAKENMVFAGTTVVNGSCVCIVITTGMDTEIGKIQKQIHEASQEDSDTPLKKKLDEFGNRLTTAIGLVCLIVWAINYKNFISWDVVDGWPSNVKFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMAVTQFFTLGGKTTASRLISVEGTTYDPKDGGIVDWGCYNMDANLQVMAEICAVCNDAGIYFDGRLFRATGLPTEAALKVLVEKMGVPDVKSRSKTCDNAQLAANNLMDVNTVVKLGCCEWWNKRSKRVATLEFDRIRKSMSVIVREPNGQNRLLVKGAVESLLERSSHVQLADGSLVPIDNQCRELLLQRLQEMSSKGLRCLGFSYKDELGEFSDYYADTHPAHKKLLEPTYYSSIESDLIFVGIVGLRDPPREEVHKAIEDCKEAGIRVMVITGDNKSTAEAICREIRLFSEDEDLKGQSLTGKEFITLPHSEQVKILLRPGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVSAVAEGRSIYNNMKSFIRYMISSNVGEVISIFLTAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRRSDDALISSWVLFRYLVIGSYVGLATVGIFVLWYTQASFLGINLVSDGHTIIEFSQLRNWGECPSWSNFTVAPFNVGGGRLITFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEDNSLRKLPPWRNPWLLVAMSISFGLHCLILYTPFLAEVFGVIPLTFNEWFMVLLISAPVILIDEILKLVARSQRRLTKEKKA 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2715g00005 1056 CDD P-type_ATPase_SERCA 13 1045 - -
Vium2715g00005 1056 NCBIfam HAD-IC family P-type ATPase 705 817 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2715g00005 1056 NCBIfam HAD-IC family P-type ATPase 306 393 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium2715g00005 1056 SMART Cation_ATPase_N_a_2 11 85 IPR004014 -
Vium2715g00005 1056 Gene3D - 378 631 IPR023299 GO:0000166
Vium2715g00005 1056 FunFam Calcium-transporting P-type ATPase, putative 625 777 - -
Vium2715g00005 1056 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 375 628 IPR023299 GO:0000166
Vium2715g00005 1056 SUPERFAMILY Calcium ATPase, transmembrane domain M 11 1047 IPR023298 -
Vium2715g00005 1056 Pfam Cation transporting ATPase, C-terminus 817 1043 IPR006068 -
Vium2715g00005 1056 Gene3D - 30 252 - -
Vium2715g00005 1056 SFLD p-type atpase 349 784 IPR044492 -
Vium2715g00005 1056 Gene3D - 63 1045 - -
Vium2715g00005 1056 SUPERFAMILY Calcium ATPase, transduction domain A 139 248 IPR008250 -
Vium2715g00005 1056 PRINTS P-type cation-transporting ATPase superfamily signature 624 635 - -
Vium2715g00005 1056 PRINTS P-type cation-transporting ATPase superfamily signature 756 768 - -
Vium2715g00005 1056 PRINTS P-type cation-transporting ATPase superfamily signature 646 656 - -
Vium2715g00005 1056 PRINTS P-type cation-transporting ATPase superfamily signature 368 382 - -
Vium2715g00005 1056 PRINTS P-type cation-transporting ATPase superfamily signature 732 751 - -
Vium2715g00005 1056 PRINTS P-type cation-transporting ATPase superfamily signature 186 200 - -
Vium2715g00005 1056 SFLD Haloacid Dehalogenase 349 784 - -
Vium2715g00005 1056 PRINTS Sodium/potassium-transporting ATPase signature 361 382 - -
Vium2715g00005 1056 PRINTS Sodium/potassium-transporting ATPase signature 985 1009 - -
Vium2715g00005 1056 FunFam Calcium-transporting ATPase, putative 115 250 - -
Vium2715g00005 1056 Pfam E1-E2 ATPase 133 348 - -
Vium2715g00005 1056 SUPERFAMILY HAD-like 366 836 IPR036412 -
Vium2715g00005 1056 PANTHER CALCIUM-TRANSPORTING ATPASE 19 1048 - -
Vium2715g00005 1056 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 378 631 - -
Vium2715g00005 1056 Gene3D - 365 777 IPR023214 -
Vium2715g00005 1056 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 796 1050 - -
Vium2715g00005 1056 Pfam haloacid dehalogenase-like hydrolase 365 746 - -
Vium2715g00005 1056 Pfam Cation transporter/ATPase, N-terminus 13 80 IPR004014 -
Vium2715g00005 1056 FunFam Calcium-transporting ATPase, putative 214 364 - -
Vium2715g00005 1056 ProSitePatterns E1-E2 ATPases phosphorylation site. 370 376 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2715g00005 Vium-Chr2715 16414 22870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2715g00005 6 1054 Primary Pumps ATPases(2) AT4G00900 78.443 0.0 1712
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2715g00005 K01537 - gmx:100800498 1968.74