Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2713g00006 ATGGGAAGACCACCTTGTTGTGACAAAGAAGGAGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATACAGGAGCATGGTCCTGGCAATTGGAGGACAGTTCCTACCAAGACAGGGTTGTCAAGATGCAGTAAGAGTTGTAGACTTAGATGGACAAATTACCTGCGGCCAGGAATCAAACGTGGTAACTTCACAGAACAAGAGGAGAAGATGATTATCCACCTTCAAGATCTTTTAGGGAACAGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACGGATAATGACATAAAGAACTATTGGAACACCCATTTAAGAAAGAAGTTGAAAAAGTTGCAAACAGGTAGTGAAGGTAGCTTGGGAGATTCGTTTTCAGGATCAAGGCAAATTCCTAGGGGCCAGTGGGAAAGAAGGCTCCAAACTGATATCCAAATGGCAAAGAGAGCTCTCAGTGAAGCTCTTTCCCCAGAGAAGCCGTCTTGTTTATCTGGATCAAACTCAAACCCTTCTGATAGTAGCAGTTCCTTCTCTTCCACCAAACCACCTCAATCATTGTGCTATGCTTCGAGTGCTGAGAACATAGCTCGTATGTTGAAGGGTTGGATGAAAAACCCTCCAAAGTCCTCAAGAACTAACTCATCTGTGACTCAGAACTCCTTCAACAACTTAGTCGCAGCTGGTGCTGATACTGCTTCTAGTGATGCAAAGGGACCCAACAGTGTTGAATTGTCTGAGAGTTTTGAATCCCTGTTTGAGTTTCATCAGTCTTTGGAGTCCTCAAACTCTGATGAATTGTCTCAGTCGTTTTCTCCCGAAGAAAACAAGCCTGATATTGGTGAAATAATGCCCTTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGCTTGCCAAGAGAAAGTTGGTTGTGGTGATGCCAAGTTTTTCTAA 951 0.4364 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRTVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKLQTGSEGSLGDSFSGSRQIPRGQWERRLQTDIQMAKRALSEALSPEKPSCLSGSNSNPSDSSSSFSSTKPPQSLCYASSAENIARMLKGWMKNPPKSSRTNSSVTQNSFNNLVAAGADTASSDAKGPNSVELSESFESLFEFHQSLESSNSDELSQSFSPEENKPDIGEIMPFSLLEKWLLDEAACQEKVGCGDAKFF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2713g00006 316 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vium2713g00006 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium2713g00006 316 CDD SANT 69 112 IPR001005 -
Vium2713g00006 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium2713g00006 316 MobiDBLite consensus disorder prediction 160 190 - -
Vium2713g00006 316 SMART sant 13 63 IPR001005 -
Vium2713g00006 316 SMART sant 66 114 IPR001005 -
Vium2713g00006 316 FunFam MYB-related transcription factor 13 66 - -
Vium2713g00006 316 CDD SANT 16 61 IPR001005 -
Vium2713g00006 316 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium2713g00006 316 FunFam Transcription factor MYB30 68 126 - -
Vium2713g00006 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vium2713g00006 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium2713g00006 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Vium2713g00006 316 MobiDBLite consensus disorder prediction 119 142 - -
Vium2713g00006 316 Gene3D - 13 66 - -
Vium2713g00006 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 249 - -
Vium2713g00006 316 MobiDBLite consensus disorder prediction 165 190 - -
Vium2713g00006 316 MobiDBLite consensus disorder prediction 123 137 - -
Vium2713g00006 316 Gene3D - 69 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2713g00006 Vium-Chr2713 152101 153803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2713g00006 1 313 MYB Transcription Factor Family AT5G62470 51.955 5.16e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium2713g00006 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2713g00006 K09422 - gmx:778080 503.442