Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2713g00006 | ATGGGAAGACCACCTTGTTGTGACAAAGAAGGAGTCAAGAAAGGGCCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATACAGGAGCATGGTCCTGGCAATTGGAGGACAGTTCCTACCAAGACAGGGTTGTCAAGATGCAGTAAGAGTTGTAGACTTAGATGGACAAATTACCTGCGGCCAGGAATCAAACGTGGTAACTTCACAGAACAAGAGGAGAAGATGATTATCCACCTTCAAGATCTTTTAGGGAACAGATGGGCTGCAATAGCTTCATACCTTCCACAGAGAACGGATAATGACATAAAGAACTATTGGAACACCCATTTAAGAAAGAAGTTGAAAAAGTTGCAAACAGGTAGTGAAGGTAGCTTGGGAGATTCGTTTTCAGGATCAAGGCAAATTCCTAGGGGCCAGTGGGAAAGAAGGCTCCAAACTGATATCCAAATGGCAAAGAGAGCTCTCAGTGAAGCTCTTTCCCCAGAGAAGCCGTCTTGTTTATCTGGATCAAACTCAAACCCTTCTGATAGTAGCAGTTCCTTCTCTTCCACCAAACCACCTCAATCATTGTGCTATGCTTCGAGTGCTGAGAACATAGCTCGTATGTTGAAGGGTTGGATGAAAAACCCTCCAAAGTCCTCAAGAACTAACTCATCTGTGACTCAGAACTCCTTCAACAACTTAGTCGCAGCTGGTGCTGATACTGCTTCTAGTGATGCAAAGGGACCCAACAGTGTTGAATTGTCTGAGAGTTTTGAATCCCTGTTTGAGTTTCATCAGTCTTTGGAGTCCTCAAACTCTGATGAATTGTCTCAGTCGTTTTCTCCCGAAGAAAACAAGCCTGATATTGGTGAAATAATGCCCTTCTCTTTGCTTGAGAAATGGCTTCTTGATGAGGCTGCTTGCCAAGAGAAAGTTGGTTGTGGTGATGCCAAGTTTTTCTAA | 951 | 0.4364 | MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWRTVPTKTGLSRCSKSCRLRWTNYLRPGIKRGNFTEQEEKMIIHLQDLLGNRWAAIASYLPQRTDNDIKNYWNTHLRKKLKKLQTGSEGSLGDSFSGSRQIPRGQWERRLQTDIQMAKRALSEALSPEKPSCLSGSNSNPSDSSSSFSSTKPPQSLCYASSAENIARMLKGWMKNPPKSSRTNSSVTQNSFNNLVAAGADTASSDAKGPNSVELSESFESLFEFHQSLESSNSDELSQSFSPEENKPDIGEIMPFSLLEKWLLDEAACQEKVGCGDAKFF | 316 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2713g00006 | 316 | Pfam | Myb-like DNA-binding domain | 67 | 112 | IPR001005 | - | |
Vium2713g00006 | 316 | Pfam | Myb-like DNA-binding domain | 14 | 61 | IPR001005 | - | |
Vium2713g00006 | 316 | CDD | SANT | 69 | 112 | IPR001005 | - | |
Vium2713g00006 | 316 | ProSiteProfiles | Myb-like domain profile. | 62 | 112 | IPR001005 | - | |
Vium2713g00006 | 316 | MobiDBLite | consensus disorder prediction | 160 | 190 | - | - | |
Vium2713g00006 | 316 | SMART | sant | 13 | 63 | IPR001005 | - | |
Vium2713g00006 | 316 | SMART | sant | 66 | 114 | IPR001005 | - | |
Vium2713g00006 | 316 | FunFam | MYB-related transcription factor | 13 | 66 | - | - | |
Vium2713g00006 | 316 | CDD | SANT | 16 | 61 | IPR001005 | - | |
Vium2713g00006 | 316 | SUPERFAMILY | Homeodomain-like | 11 | 108 | IPR009057 | - | |
Vium2713g00006 | 316 | FunFam | Transcription factor MYB30 | 68 | 126 | - | - | |
Vium2713g00006 | 316 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 65 | IPR017930 | - | |
Vium2713g00006 | 316 | ProSiteProfiles | Myb-like domain profile. | 9 | 61 | IPR001005 | - | |
Vium2713g00006 | 316 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 66 | 116 | IPR017930 | - | |
Vium2713g00006 | 316 | MobiDBLite | consensus disorder prediction | 119 | 142 | - | - | |
Vium2713g00006 | 316 | Gene3D | - | 13 | 66 | - | - | |
Vium2713g00006 | 316 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 1 | 249 | - | - | |
Vium2713g00006 | 316 | MobiDBLite | consensus disorder prediction | 165 | 190 | - | - | |
Vium2713g00006 | 316 | MobiDBLite | consensus disorder prediction | 123 | 137 | - | - | |
Vium2713g00006 | 316 | Gene3D | - | 69 | 129 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2713g00006 | Vium-Chr2713 | 152101 | 153803 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2713g00006 | 1 | 313 | MYB Transcription Factor Family | AT5G62470 | 51.955 | 5.16e-105 | 309 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Vium2713g00006 | Myb_DNA-binding | 1.1e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium2713g00006 | K09422 | - | gmx:778080 | 503.442 |