Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2713g00005 ATGGACATAACCCCAACAACAATCATAAACAACACCACTCCCAGTGCAACAACAAAATCCCCAGAACATGACACCGAAACACCCACCAGGATCAACACCCCCACCGCAACCAAGGCCTTGTCTTTCTCCAACGGGGTACTCAAGCGACACCATCACCACCACCACCACCCCATCCCCGCCGCCGTCACCTACAAGGAATGCCTCAAAAACCACGCCGCCAACTTGGGTGGGCACGCTTTAGATGGATGCGGCGAGTTCATGCCGTCCCCCACAGCCACTGCCGCCGACCCCAGCTCCATTAAATGCGCAGCATGCGGCTGCCACCGCAACTTCCACCGCCGCGAGCCAGATGAGCCGCCCATCGCATCCACCACGCATGTGATCGAGTACCAGCCGCACCATCGCCACCACCCTCCGCCTCCGTTCCAGGCAGCGGGGGCGAATCGAAGTCCGAATTCTGCATCCCCGCCGCCGATCTCCTCCTCTTACTACCCCTCCGCCCCGCACATGCTCCTTGCCCTCTCCGCCGGGCTCGCTGCTCCGCCTGAGAGCACGGCCGCACCCTCCGCGCTCACCAGAAAGCGCTTTAGAACCAAGTTCAGCCAGGACCAGAAGGAGAAGATGCACAAGTTCGCTGAGAAAGTAGGGTGGAAGATGCAGAAGAGAGACGAAGATTTGATTCACGAGTTTTGCAACGAGATTGGCGTGGATAGAAGCGTTCTCAAGGTTTGGATGCACAACAACAAAAACACCTTGGCCAAAAAAGATAATAATGTTAATATTACTAGCAATGATAATATTACTAATAATATTAATGATAATGATGCAAATGGGGGTGTCAAGGGTTTTGAAGAAGACCCTGATAGCAACATCGGTGGTGGTGCTGAAGATCGCAGTGAGGATCCGAGTCGCAATCACTTTGGTGGGTTGAACGTTGGTGCTAATGCTAACGGGTCTTCTTCTACTTCTTGA 972 0.5412 MDITPTTIINNTTPSATTKSPEHDTETPTRINTPTATKALSFSNGVLKRHHHHHHHPIPAAVTYKECLKNHAANLGGHALDGCGEFMPSPTATAADPSSIKCAACGCHRNFHRREPDEPPIASTTHVIEYQPHHRHHPPPPFQAAGANRSPNSASPPPISSSYYPSAPHMLLALSAGLAAPPESTAAPSALTRKRFRTKFSQDQKEKMHKFAEKVGWKMQKRDEDLIHEFCNEIGVDRSVLKVWMHNNKNTLAKKDNNVNITSNDNITNNINDNDANGGVKGFEEDPDSNIGGGAEDRSEDPSRNHFGGLNVGANANGSSSTS 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2713g00005 323 MobiDBLite consensus disorder prediction 146 160 - -
Vium2713g00005 323 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 63 115 IPR006456 -
Vium2713g00005 323 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 64 115 IPR006456 -
Vium2713g00005 323 SUPERFAMILY Homeodomain-like 185 254 IPR009057 -
Vium2713g00005 323 MobiDBLite consensus disorder prediction 1 32 - -
Vium2713g00005 323 MobiDBLite consensus disorder prediction 269 323 - -
Vium2713g00005 323 MobiDBLite consensus disorder prediction 131 161 - -
Vium2713g00005 323 Gene3D - 182 255 - -
Vium2713g00005 323 NCBIfam homeobox domain, ZF-HD class 193 250 IPR006455 -
Vium2713g00005 323 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 39 252 - -
Vium2713g00005 323 FunFam Zinc-finger homeodomain protein 2 182 254 - -
Vium2713g00005 323 Pfam ZF-HD protein dimerisation region 62 116 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2713g00005 Vium-Chr2713 114651 116140 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2713g00005 1 249 ZF-HD Transcription Factor Family AT5G15210 53.785 5.31e-77 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vium2713g00005 ZF-HD_dimer 2.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2713g00005 - - gmx:100786999 462.225