Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2709g00001 ATGGGAACCTCTTGCCTAAAATCTGCATCACTTCTTCATGATCTGAAGGTGACAATCCACAAAACTTCAACCATATTTCCATCCAAAGAAATGGAGAAGAAGTCCTTGTTCCTAACAAACATAGACAGAGTAGTAAACTTTGATGTGGACACGCTTCACTTCTTCGCAGCAAACAAAGCTTTTTCATTCCAAAAGGTGGCTGAGAAGTTGAAGAAGGCCCTGGAGGATGCTCTTGTGCATTATTCCTTCTTAGCCGGAAGGTTGAGACAGAATCCTGAAACCAAGAGATTAGAGATAGATTGCAACGAAAAAGGTGCTGAGTTTGTAGTGGCTTCAAGTAAGCACAAGTTAACTGAGATTGGAGACTTGGCTTATCCCAATCCAGCTTATGCACAATTGGTTCACAAGAGTAAGGATCTTCCACTATGCGCTGTGCAGCTGACATCCTTTGACTGTGGTGGCTTCGCAATGGGCTTCACAACCAGCCACGCAGCCTTTGACGGACTTAGCTTCAAAACCTTCTTGGACAACCTTGCGGCACTGGCTGCTAATAAACCTTTGGCTGTGATACCCTGCCACGACAGGCACCTCCTGGCCGCACGATCACCACCACGTGTAACCTTCCCGAACCCCGAGTTGATCGAACTCGATCAGTCACCAGTTATTGAGTCCAGCGTCTTTGATGCTTCCAAAGAAGAAGTCGACTTTAGGATTTTGAAACTAACCTCAAAAGACATCCTGAGCCTCAAGGAGAAAGCAAAGGGAAGCACCAACGCCAGCAACACCGGGTTTAACGTTATCACCGCCCATATATGGCGGTGCAAGGCCTTATCAGCACCGTATGACCCTGCTGGATCCTCGACCGTACTATTCGCCGTGGACATACGTTCGAAACTGAACCCTCCGTTGCCGGAAGGCTTCGCTGGCAACGCCGTGTTAACGGCATTTGCTTCGGCGAAATACGAGGAGTTGGAGAAGGGTGAGTTTTCAAGGTTGGTGGAGATGGTGAAAGAGGGAGCAGAGAGAATGAGTGATGAGTATGTGAGGTCTGTTATAGACCGGGGAGAGCTGGGTGATGGGTTTCCTCGTGGGGATGTTTTGGTGTCTTCGTGGTGGAGATTAGGGTTTGAAAAGGTGGAGTATCCATGGGGGAAGCCAAAGTATTGTTTCCCTCTGGTGCATCATCGGAAGGATATTATTCTGTTGTTTCCTCCCTTTGGCGCAGGTGGTGATGATGGGATCAACATTATAGTGGCTCTTCCTCCCAAGGAAATGGAAAAATTCGAGAGCCTCTTTCACATGTTCTTGCATTCAGTTTAA 1320 0.4765 MGTSCLKSASLLHDLKVTIHKTSTIFPSKEMEKKSLFLTNIDRVVNFDVDTLHFFAANKAFSFQKVAEKLKKALEDALVHYSFLAGRLRQNPETKRLEIDCNEKGAEFVVASSKHKLTEIGDLAYPNPAYAQLVHKSKDLPLCAVQLTSFDCGGFAMGFTTSHAAFDGLSFKTFLDNLAALAANKPLAVIPCHDRHLLAARSPPRVTFPNPELIELDQSPVIESSVFDASKEEVDFRILKLTSKDILSLKEKAKGSTNASNTGFNVITAHIWRCKALSAPYDPAGSSTVLFAVDIRSKLNPPLPEGFAGNAVLTAFASAKYEELEKGEFSRLVEMVKEGAERMSDEYVRSVIDRGELGDGFPRGDVLVSSWWRLGFEKVEYPWGKPKYCFPLVHHRKDIILLFPPFGAGGDDGINIIVALPPKEMEKFESLFHMFLHSV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2709g00001 439 Pfam Transferase family 15 431 - -
Vium2709g00001 439 Gene3D - 221 434 IPR023213 -
Vium2709g00001 439 Gene3D - 11 214 IPR023213 -
Vium2709g00001 439 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 26 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2709g00001 Vium-Chr2709 30921 33974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2709g00001 15 432 Monolignol Biosynthesis Gene Families AT5G48930 29.478 4.31e-49 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2709g00001 K13065 - gmx:100780971 669.077