Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2707g00006 ATGCCTGATGCTTCACTGAACCCAACAAGTCTGGTTGTGGTTTCCATTGCAAGTGCTTTTGCTTTGTCTTGTGTTCTGTATAATGCATGGGAGATCTCAGGTGGACACGTCAACCCAGCAGTGACCTTTGCAATGGCAGTGGGAGGTCACGTTAGTGTACCAACTGCACTCTTTTACTGGGTCGCTCAACTTATAGCCTCTGTTATGGCTTGCCTTGTTCTAAGAGGCATTGTTGTTGGCATGCATGTTCCAACCTACACCATTGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGCTAGAGGGTCTACTGACATTTGTTTTGGTGTACACAGTGTATGCAGCCAGGGATCCTAGGCGTCTTTCACTGGGTTCCAATGGCATACTTGTAGTTGGGTTTGTGGCTGGTGCAGGTGTCTTAGCCGCAGGTCCATTCTCTGGTGGGTCAATGAACCCTGCATGTGCTTTTGGCTCTGCAACCATTGCAGGCTCTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATCGGTGCCACCATAGCTGGTCTTCTTTATGACAATGTGCTGTTCCGTTCTCTGCCTCCAGCAGCAGGGCTTTCAGAAGGAATTGGGGTATGA 621 0.4928 MPDASLNPTSLVVVSIASAFALSCVLYNAWEISGGHVNPAVTFAMAVGGHVSVPTALFYWVAQLIASVMACLVLRGIVVGMHVPTYTIAEEMTGFGASVLEGLLTFVLVYTVYAARDPRRLSLGSNGILVVGFVAGAGVLAAGPFSGGSMNPACAFGSATIAGSFRNQAVYWVGPLIGATIAGLLYDNVLFRSLPPAAGLSEGIGV 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2707g00006 206 ProSitePatterns MIP family signature. 36 44 IPR022357 -
Vium2707g00006 206 SUPERFAMILY Aquaporin-like 6 195 IPR023271 -
Vium2707g00006 206 Pfam Major intrinsic protein 9 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00006 206 Gene3D Glycerol uptake facilitator protein. 1 195 IPR023271 -
Vium2707g00006 206 PRINTS Major intrinsic protein family signature 169 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00006 206 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00006 206 PRINTS Major intrinsic protein family signature 18 42 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00006 206 PRINTS Major intrinsic protein family signature 100 118 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00006 206 PRINTS Major intrinsic protein family signature 132 154 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00006 206 PANTHER AQUAPORIN-8 9 191 IPR034294 -
Vium2707g00006 206 FunFam Probable aquaporin TIP5-1 1 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2707g00006 Vium-Chr2707 34125 36483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2707g00006 8 190 Major Intrinsic Protein MIP AT3G47440 67.760 3.70e-84 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2707g00006 K09873 - gmx:100801448 338.576