Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2707g00005 ATGGCTCCATCTTCTGCCATTGTCACTTCCCGTTTTCATGAATCCATCACTCGCCATGCACTTCGCTCCTATCTCTCTGAGTTCATCTCCACCTTCTTCTACGTCTTTCTCGTCGTTGGCTCTGGAATGTCCTCACGGAAGTTGATGCCTGATGCTTCACTGAACCCAACAAGTCTGGTTGTGGTTTCCATTGCAAGTGCTTTTGCTTTGTCTTGTGTTCTGTATAATGCATGGGAGATCTCAGGTGGACACGTCAACCCAGCAGTGACCTTTGCAATGGCAGTGGGAGGTCACGTTAGTGTACCAACTGCACTCTTTTACTGGGTCGCTCAACTTATAGCCTCTGTTATGGCTTGCCTTGTTCTAAGAGGCATTGTTGTTGGCATGCATGTTCCAACCTACACCATTGCAGAAGAGATGACAGGGTTTGGAGCATCAGTGCTAGAGGGTCTACTGACATTTGTTTTGGTGTACACAGTGTATGCAGCCAGGGATCCTAGGCGTCTTTCACTGGGTTCCAATGGCATACTTGTAGTTGGGTTTGTGGCTGGTGCAGGTGTCTTAGCCGCAGGTCCATTCTCTGGTGGGTCAATGAACCCTGCATGTGCTTTTGGCTCTGCAACCATTGCAGGCTCTTTCAGGAACCAAGCAGTGTATTGGGTTGGACCCTTGATCGGTGCCACCATAGCTGGTCTTCTTTATGACAATGTGCTGTTCCGTTCTCTGCCTCCAGCAGCAGGGCTTTCAGAAGGAATTGGGGTATGA 765 0.4928 MAPSSAIVTSRFHESITRHALRSYLSEFISTFFYVFLVVGSGMSSRKLMPDASLNPTSLVVVSIASAFALSCVLYNAWEISGGHVNPAVTFAMAVGGHVSVPTALFYWVAQLIASVMACLVLRGIVVGMHVPTYTIAEEMTGFGASVLEGLLTFVLVYTVYAARDPRRLSLGSNGILVVGFVAGAGVLAAGPFSGGSMNPACAFGSATIAGSFRNQAVYWVGPLIGATIAGLLYDNVLFRSLPPAAGLSEGIGV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2707g00005 254 PANTHER AQUAPORIN-8 11 239 IPR034294 -
Vium2707g00005 254 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00005 254 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00005 254 PRINTS Major intrinsic protein family signature 22 41 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00005 254 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00005 254 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00005 254 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00005 254 Pfam Major intrinsic protein 18 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vium2707g00005 254 FunFam Probable aquaporin TIP5-1 6 246 - -
Vium2707g00005 254 SUPERFAMILY Aquaporin-like 12 243 IPR023271 -
Vium2707g00005 254 Gene3D Glycerol uptake facilitator protein. 5 243 IPR023271 -
Vium2707g00005 254 ProSitePatterns MIP family signature. 84 92 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2707g00005 Vium-Chr2707 34124 36483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2707g00005 1 238 Major Intrinsic Protein MIP AT3G47440 63.866 4.60e-102 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2707g00005 K09873 - gmx:100801448 421.009