Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2707g00001 ATGTTAGGTTCACAGTACCACTTGCAGGGATCGAAAGACTGGGATGAAGATGGCATAAAAATAATCCAACTTCTCAACGAGTGTGCCAGTTTTACTGAATCAGGAAACTTCATTGATGCAGATACTGCACTCTACAATCTCTCTCACCTTGCTTCCCCAGATGGCGATTCAATGCAACGAGTTGCCACTTATTTCACTGAGGCACTAGCACATTGCCAATTGGCCAAAAATCTGCGTGGTGTACCTAAAGTTCTCCGCTTGGTGAGAGCATTATCAACTCCTGAACAGCAACTTCTGAATCAGCTGTTCTTTGATTTCTACCCCTTCTTAAAGATCGCTCACACGATCACAAATCACACCATTATAGAAGCCATGCGAGGGGAAACAGCGATCAACGTGCTTGATCTCAGTCCATCCAACGCAGATCAGTGGAGTAATCTCATGCAGGGTTTGAGAGAGCATTTAACAAACACACCGTATCTGACGATTACTGTCACAGCCATACACGAGAAGAAGGAAGTGTTAGAACAAATGGAGTTGCGTCTGAAAGTTGAAGCTGAAAGGTTGAACTTCCTTTTCAAATTCAACGCTGTTGTGAGCAGTTTGGAGAGCCTTGACCCTGAGACTTTGCCCATCAAGAAAGGTGAGCCTCTTGCGATTTGCTGCGTGCTTCGGCTTCATTCTCTTCTGGCTGCAAATCATGATGAGATGGTGAAAACGAAGGTTCAGAGGGCTTTTTCTGAGATGCTTATAAATCAAAGTCCTGACTCTGCACTCTCACCTTTTTCTCCATGTCCATCACAGAAGATGGAGAGTTTTCTGAATGGTCTGTGGCGGCTCCGACCCAATGTGATGTTGATCACTGAGCAGGAATCAAACGTTAATGGAGCTAGTTTGAGAGAAAGGGTGTTCAAAGCTTTGAGCTTTTACTGCACACTGTTTGATTGCTTGGAAGCCTCAGCTTCAAGAACATTGATAGGGAGAAGCCTATTGGAGAAGATGCTTCTTGGTGAAGAGATCAAGAACATTGTTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGCATGAGAAACTAGAAACATGGATTCCAAGGCTTGAATTGGCTGGATTTGGAATGGCTTCTGTTAGTTCCAATGGAATTTGGCTTGCAGAAAAGTTGTTGCAAAGCTATGTGCCTGGTTACCACATGCATCAGAAGAACCAGTTCTTGTTTATTTGTTGGGAGAAAATTCCTCTGTTTTCAATTTCTGCATGGAAGTTTTAG 1263 0.4371 MLGSQYHLQGSKDWDEDGIKIIQLLNECASFTESGNFIDADTALYNLSHLASPDGDSMQRVATYFTEALAHCQLAKNLRGVPKVLRLVRALSTPEQQLLNQLFFDFYPFLKIAHTITNHTIIEAMRGETAINVLDLSPSNADQWSNLMQGLREHLTNTPYLTITVTAIHEKKEVLEQMELRLKVEAERLNFLFKFNAVVSSLESLDPETLPIKKGEPLAICCVLRLHSLLAANHDEMVKTKVQRAFSEMLINQSPDSALSPFSPCPSQKMESFLNGLWRLRPNVMLITEQESNVNGASLRERVFKALSFYCTLFDCLEASASRTLIGRSLLEKMLLGEEIKNIVACEGVERKERHEKLETWIPRLELAGFGMASVSSNGIWLAEKLLQSYVPGYHMHQKNQFLFICWEKIPLFSISAWKF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2707g00001 420 Coils Coil 168 188 - -
Vium2707g00001 420 ProSiteProfiles GRAS family profile. 12 419 IPR005202 -
Vium2707g00001 420 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 19 414 IPR005202 -
Vium2707g00001 420 Pfam GRAS domain family 22 419 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2707g00001 Vium-Chr2707 20293 21555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2707g00001 4 419 GRAS Transcription Factor Family AT1G50420 41.704 3.19e-108 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vium2707g00001 GRAS 1.1e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2707g00001 - - vra:106778126 805.438