Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2705g00004 ATGGCTAATTTATTGAACCATCCAGAAGTTATAAAGAAGGCAAAAAATGAAATAGACACTCATGTAGGATCAGATCGTCTCGTAGAGGAATCTGACATGTCAAAACTTCCTTACATTCAATGCATTGTTTACGAGACACTTCGATTGCATCCTGCTGCTCCAATTTGGTCACCACATTTGTCTTCAGAAGATTGCATTGTAGGAAAATATAATCTCCCGAAAGACACAATTGTGTTGGTGAATGCTTGGGCTGCCCATATGGATCCAAAAATGTGGAGTGATCCAACACACTTTAATCCTGAAAGGTTTGAGAACGAAAATGAAGTAAACAGGTTACTTTCATTTGGGTTAGGTCGGAGGGCTTGCCCTGGATCAAACTTGGCTCAACGCACAGTTGGCTTATCTATAGCTTTATTACTTCAATGTTTTGAGTGGAAACGAATTGGTAAGTAA 453 0.3929 MANLLNHPEVIKKAKNEIDTHVGSDRLVEESDMSKLPYIQCIVYETLRLHPAAPIWSPHLSSEDCIVGKYNLPKDTIVLVNAWAAHMDPKMWSDPTHFNPERFENENEVNRLLSFGLGRRACPGSNLAQRTVGLSIALLLQCFEWKRIGK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2705g00004 150 Gene3D Cytochrome P450 1 150 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2705g00004 150 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2705g00004 150 PRINTS P450 superfamily signature 122 133 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2705g00004 150 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2705g00004 150 PRINTS P450 superfamily signature 113 122 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2705g00004 150 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2705g00004 150 PRINTS E-class P450 group I signature 112 122 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2705g00004 150 PRINTS E-class P450 group I signature 81 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2705g00004 150 PRINTS E-class P450 group I signature 122 145 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2705g00004 150 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 115 124 IPR017972 GO:0005506|GO:0016705
Vium2705g00004 150 Pfam Cytochrome P450 2 146 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium2705g00004 150 PANTHER CYTOCHROME P450 82C3-RELATED 1 147 - -
Vium2705g00004 150 SUPERFAMILY Cytochrome P450 1 148 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2705g00004 Vium-Chr2705 44845 45640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2705g00004 1 149 Cytochrome P450 AT5G36220 63.087 2.14e-73 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2705g00004 K13260 - vum:124831494 315.464