Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2704g00008 ATGATAACCATGGAACCTAGAGTGATAGGGGATTACATAATGGGTCCTCCAATCGGGTCGGGTTCCTTTGCCGTGGTATGGCGTTCAAGGCACCGAGTTTCCGGTTTGGAAGTTGCGATTAAGGAGATTGATCAGAGACAACTCAGTCCTAAAGTCCACGAACATCTTCTCAAAGAGATTTCGATCCTTAGCACCATCAAGCACCCCAACATAGTTCGACTCTTTGAGACAATTCAGACCAATGACAGGATTTACCTTGTTTTGGAGTATTGTGCTGGTGGGGACCTTGCTGCTTACATTCACCGCCATGGCAAAGTTTCTGAAACTATTGCACGCCATCTCATGAGGCAATTGGCTGCTGGGTTACAGGTGCTTCAGGAAAAGAACCTCATTCACAGAGATTTAAAACCACAGAATTTACTATTGGCAACTACTGCAGCCACACCAATTATGAAAATAGGAGATTTTGGTTTTGCAAGGTCTCTCACACCCCAGAGTTTGGCTGATACACTATGTGGTTCACCTTATTACATGGCTCCAGAGATTATTGAGAATCAAAAGTACGATGCCAAGGCTGATTTATGGAGTGTTGGAGCAATTTTGTATCAACTAGTGATTGGGAGGCCACCATTTGATGGAAATACTCAATATCAGCTTTTTCAAAATATTTTGGCATCCACTGAACTGTACTTTCCGCCCGAGGCATTACAAGAGCTACATTCTGATTGCTTGGATCTTTGCAGAAACCTCTTACGTCAAAATCCAGATGAGAGATTAACATTCAAGGCATTCTTCAACCACAATTTCCTTCAGAATTCCAGGTCAACCGTAGGAAAATTGACTGTTCATCAATCAGGTGGCTCTCTGTCCGAGATGTCTCCAACTATTGCAAGTGGTAAGATGGGGAAGGCTGTTGATGCTGATTCCCGTTTAATGCAGTCTGTAGAGAAAGACTATGTACTTGTCCATTCCCATTTTGCATCATTGGAGGCTTTTTCTGACTACTTTGATGCATCTGTGCAAGATGATTCCTTATACAGTATTGCTCAAAGTCATTCAAAGATTGCTAAACCGGATATTGGAGTTCCAAAACAAACAACGGATCTGACATCTTCCTCCAGTAGAAGATTAGAGAATCTAGAAAGCAATAAACTTGAGGCATGTGTGGCATCATGTGAATTTACTGCTTTAAGGGAAGAGCATGATATTTCCTCACTGCAACCTTCAAACAGGTTAAAGTTGTTGCATGAGTATGGGAAGATCCTTAAAGAACTTTCGCAACAAAAGTATGATACAGGACTGTATCTAGAGTCACTTGCAGTTGAGTTGGTGATTCTGGCGATATGGAAGAAGGCTCTAGAAATCTGTAACTCTTGGATGGCCTCCCTTACTACTAGTGGGTTTCCTGAAAGCAGTTCAACTAACGAATCCATATCTTCAAGTAATGTGGAGTTACCACAGACTTCAGAACTGAAAATAAATTTTAGTGATCCTCCCTCTGTCTCCATGTGGGCAAAACATGAGTTTGTTCTTGCTGTTGATCGTGCTGAAAAACTATCATGTCGTGTTCAAAATATGGATGGAGCTGCTGAGATGCCAGATGCAATGGAAATTATATTCCAAAACGCTCTTTCAATCGGGACAAGTGGTGCGGTAGATGAATATATGGAGAACAGAGATAGGGCTAGTGCTTCTTACTCAAGAGCGATGCTGCTACTTTCATTTTTGGTGAGAGAAGCAGAGAACCTTCCACTGAACCCACCATTTTCACTCATTGCCACTAATAAAGAGAGAATCTTACAATACATTTACACATTACAGTCTCGTAAGAAATCTTCGTTGGAGTCCTCTTCAAATAAGCTACTTTCACTTACAATAAAGTAG 1884 0.4151 MITMEPRVIGDYIMGPPIGSGSFAVVWRSRHRVSGLEVAIKEIDQRQLSPKVHEHLLKEISILSTIKHPNIVRLFETIQTNDRIYLVLEYCAGGDLAAYIHRHGKVSETIARHLMRQLAAGLQVLQEKNLIHRDLKPQNLLLATTAATPIMKIGDFGFARSLTPQSLADTLCGSPYYMAPEIIENQKYDAKADLWSVGAILYQLVIGRPPFDGNTQYQLFQNILASTELYFPPEALQELHSDCLDLCRNLLRQNPDERLTFKAFFNHNFLQNSRSTVGKLTVHQSGGSLSEMSPTIASGKMGKAVDADSRLMQSVEKDYVLVHSHFASLEAFSDYFDASVQDDSLYSIAQSHSKIAKPDIGVPKQTTDLTSSSSRRLENLESNKLEACVASCEFTALREEHDISSLQPSNRLKLLHEYGKILKELSQQKYDTGLYLESLAVELVILAIWKKALEICNSWMASLTTSGFPESSSTNESISSSNVELPQTSELKINFSDPPSVSMWAKHEFVLAVDRAEKLSCRVQNMDGAAEMPDAMEIIFQNALSIGTSGAVDEYMENRDRASASYSRAMLLLSFLVREAENLPLNPPFSLIATNKERILQYIYTLQSRKKSSLESSSNKLLSLTIK 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2704g00008 627 ProSiteProfiles Protein kinase domain profile. 12 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2704g00008 627 CDD STKc_ATG1_ULK_like 18 269 - -
Vium2704g00008 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vium2704g00008 627 FunFam Non-specific serine/threonine protein kinase 1 92 - -
Vium2704g00008 627 Gene3D Transferase(Phosphotransferase) domain 1 4 334 - -
Vium2704g00008 627 Pfam Protein kinase domain 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2704g00008 627 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 6 543 IPR045269 GO:0004674|GO:0006914
Vium2704g00008 627 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vium2704g00008 627 SMART serkin_6 12 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2704g00008 627 SUPERFAMILY Protein kinase-like (PK-like) 8 271 IPR011009 -
Vium2704g00008 627 FunFam Maternal embryonic leucine zipper kinase 6 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2704g00008 Vium-Chr2704 14196 19343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2704g00008 8 260 CBL-interacting serine-threonine protein kinases AT2G30360 34.749 2.96e-47 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vium2704g00008 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2704g00008 - K08269 gmx:100782508 929.087