Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2704g00007 ATGATAACCATGGAACCTAGAGTGATAGGGGATTACATAATGGGTCCTCCAATCGGGTCGGGTTCCTTTGCCGTGGTATGGCGTTCAAGGCACCGAGTTTCCGGTTTGGAAGTTGCGATTAAGGAGATTGATCAGAGACAACTCAGTCCTAAAGTCCACGAACATCTTCTCAAAGAGATTTCGATCCTTAGCACCATCAAGCACCCCAACATAGTTCGACTCTTTGAGACAATTCAGACCAATGACAGGATTTACCTTGTTTTGGAGTATTGTGCTGGTGGGGACCTTGCTGCTTACATTCACCGCCATGGCAAAGTTTCTGAAACTATTGCACGCCATCTCATGAGGCAATTGGCTGCTGGGTTACAGGTGCTTCAGGAAAAGAACCTCATTCACAGAGATTTAAAACCACAGAATTTACTATTGGCAACTACTGCAGCCACACCAATTATGAAAATAGGAGATTTTGGTTTTGCAAGGTCTCTCACACCCCAGAGTTTGGCTGATACACTATGTGGTTCACCTTATTACATGGCTCCAGAGATTATTGAGAATCAAAAGTACGATGCCAAGGCTGATTTATGGAGTGTTGGAGCAATTTTGTATCAACTAGTGATTGGGAGGCCACCATTTGATGGAAATACTCAATATCAGCTTTTTCAAAATATTTTGGCATCCACTGAACTGTACTTTCCGCCCGAGGCATTACAAGAGCTACATTCTGATTGCTTGGATCTTTGCAGAAACCTCTTACGTCAAAATCCAGATGAGAGATTAACATTCAAGGCATTCTTCAACCACAATTTCCTTCAGAATTCCAGGTCAACCGTAGGAAAATTGACTGTTCATCAATCAGGTGGCTCTCTGTCCGAGATGTCTCCAACTATTGCAAGTGATTCCCGTTTAATGCAGTCTGTAGAGAAAGACTATGTACTTGTCCATTCCCATTTTGCATCATTGGAGGCTTTTTCTGACTACTTTGATGCATCTGTGCAAGATGATTCCTTATACAGTATTGCTCAAAGTCATTCAAAGATTGCTAAACCGGATATTGGAGTTCCAAAACAAACAACGGATCTGACATCTTCCTCCAGTAGAAGATTAGAGAATCTAGAAAGCAATAAACTTGAGGCATGTGTGGCATCATGTGAATTTACTGCTTTAAGGGAAGAGCATGATATTTCCTCACTGCAACCTTCAAACAGGTTAAAGTTGTTGCATGAGTATGGGAAGATCCTTAAAGAACTTTCGCAACAAAAGTATGATACAGGACTGTATCTAGAGTCACTTGCAGTTGAGTTGGTGATTCTGGCGATATGGAAGAAGGCTCTAGAAATCTGTAACTCTTGGATGGCCTCCCTTACTACTAGTGGGTTTCCTGAAAGCAGTTCAACTAACGAATCCATATCTTCAAGTAATGTGGAGTTACCACAGACTTCAGAACTGAAAATAAATTTTAGTGATCCTCCCTCTGTCTCCATGTGGGCAAAACATGAGTTTGTTCTTGCTGTTGATCGTGCTGAAAAACTATCATGTCGTGTTCAAAATATGGATGGAGCTGCTGAGATGCCAGATGCAATGGAAATTATATTCCAAAACGCTCTTTCAATCGGGACAAGTGGTGCGGTAGATGAATATATGGAGAACAGAGATAGGGCTAGTGCTTCTTACTCAAGAGCGATGCTGCTACTTTCATTTTTGGTGAGAGAAGCAGAGAACCTTCCACTGAACCCACCATTTTCACTCATTGCCACTAATAAAGAGAGAATCTTACAATACATTTACACATTACAGTCTCGTAAGAAATCTTCGTTGGAGTCCTCTTCAAATAAGCTACTTTCACTTACAATAAAGTAG 1857 0.4136 MITMEPRVIGDYIMGPPIGSGSFAVVWRSRHRVSGLEVAIKEIDQRQLSPKVHEHLLKEISILSTIKHPNIVRLFETIQTNDRIYLVLEYCAGGDLAAYIHRHGKVSETIARHLMRQLAAGLQVLQEKNLIHRDLKPQNLLLATTAATPIMKIGDFGFARSLTPQSLADTLCGSPYYMAPEIIENQKYDAKADLWSVGAILYQLVIGRPPFDGNTQYQLFQNILASTELYFPPEALQELHSDCLDLCRNLLRQNPDERLTFKAFFNHNFLQNSRSTVGKLTVHQSGGSLSEMSPTIASDSRLMQSVEKDYVLVHSHFASLEAFSDYFDASVQDDSLYSIAQSHSKIAKPDIGVPKQTTDLTSSSSRRLENLESNKLEACVASCEFTALREEHDISSLQPSNRLKLLHEYGKILKELSQQKYDTGLYLESLAVELVILAIWKKALEICNSWMASLTTSGFPESSSTNESISSSNVELPQTSELKINFSDPPSVSMWAKHEFVLAVDRAEKLSCRVQNMDGAAEMPDAMEIIFQNALSIGTSGAVDEYMENRDRASASYSRAMLLLSFLVREAENLPLNPPFSLIATNKERILQYIYTLQSRKKSSLESSSNKLLSLTIK 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2704g00007 618 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 6 534 IPR045269 GO:0004674|GO:0006914
Vium2704g00007 618 Pfam Protein kinase domain 16 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2704g00007 618 ProSiteProfiles Protein kinase domain profile. 12 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2704g00007 618 CDD STKc_ATG1_ULK_like 18 269 - -
Vium2704g00007 618 Gene3D Transferase(Phosphotransferase) domain 1 4 332 - -
Vium2704g00007 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vium2704g00007 618 FunFam Non-specific serine/threonine protein kinase 1 92 - -
Vium2704g00007 618 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vium2704g00007 618 SMART serkin_6 12 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2704g00007 618 SUPERFAMILY Protein kinase-like (PK-like) 8 324 IPR011009 -
Vium2704g00007 618 FunFam Maternal embryonic leucine zipper kinase 6 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2704g00007 Vium-Chr2704 14196 19343 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2704g00007 8 260 CBL-interacting serine-threonine protein kinases AT2G30360 34.749 2.39e-47 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vium2704g00007 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2704g00007 - K08269 gmx:100782508 911.368