Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2704g00003 ATGGACGCGTACTCCTCTGGAGAAGAAGTAGTTGTAAAGACTAGAAAACCGTATACAATCACAAAGCAAAGGGAACGATGGACAGAGGAGGAGCATAATAGGTTTCTAGAAGCTTTGAAGCTGCACGGGCGAGCATGGCAGCGCATAGAAGAGCATATAGGAACAAAGACTGCCGTGCAAATCAGGAGCCACGCACAGAAGTTTTTCACAAAGTTGGAGAAAGAAGCCCTTGTAAAGGGTGTTCCAATTGGACAAGCTCTTGATATAGATATTCCCCCTCCACGGCCCAAAAGAAAACCAAGCAATCCTTATCCTCGGAAGACCAGGATTGGTACCGCAACATTACATAGTGGAGCAAAGGATGGAAAGATCAATTTAGTCGAATTTTCACATGACAACCAAGCACTGGACTTGGAAAAAGAACCAGTTCCGGAGATTTATGATTTAGACGAGGGGCTAACAACAGTAAAGGAAAATAAGGATGAGAACTGTTCAAAAGTATTTACAGTTATCCAGGAGGTGCCATGTTCCTCTCTATCTTCAGCAAACAGGAGTTCAATATCTATGTCAGTGCCGCTGGGAAATTCATCCGTATTCAAGGAGACTACAACTTCAGTGAAAGAGGTAATAACTCCAGATGACAAAACTGAATCATTTCTGACTGTTGAACTTGAAAATGGGAATTTGGAGATCAATGGTGGAAAACAGGCAAATGGAACTAGTAAAAACTCCACGATAGAGAATTCTGATGCTTTACAAATGAAATTGGTTCAAAATGAGAAAACAGATGGTCTCGATAGTGCATTAACAATAGAAGGAATGCAAGGCAATAATCAGAATTACCCTAGACATGTAACTGTGCACGTTGTTGACGGGAACCTTGGAACATGTACTCAAAATCCATCACAAGATATGCTGTTTCGTGACTGCATGTTTCAGCCAATAGGAGGGGCTAATGGGCAACCAAATCTTTTCACCAATTCAGCTCCATCGAACACAAGAGAAAGTCAAAATAACACAGCACAATCTTCTGCTCATCAATCATTTCTTCCGTATCCTCCCTTCACCCAACACAACCAGGACGATTACCAATCATTTCTTCACATGTCTTCCACATTTTCTAATCTTATTGTCTCTACCTTGCTGCAAAACCCAGCAGCCCATGCTGCAGCAAGTTTCGCTGCTACATTTTGGCCCTATGCAAATCCAGAGACTTCAGCAGATTCTCCTAGGTGCTCTCAAGGAGGTTTCACATCTAGACATATTGGTTCCCCTCCAAGCGTTGCAGCTATTGCAGCTGCTACTGTAGCTGCTGCAACTGCGTGGTGGGCAACTCATGGACTGCTTCCTTTGTGTGCTCCTCTTCATACTGTTTTTGCTTGTCCTCCTGCATCTGTGACTGCAGTCCCATCAATGAATACTTCTGAAACACCATCTCTAAAGGCAGAACAAGAAAAGAGTACTCTACAAAATCCTCCTCTGCATGATCAGATGATGCATCCAGAATACTCGGAAGCTCCTCAAGCTCAACATTCAGCTTCAAAATCACTAGCTGTCATTTCATCAGATTCTGAGAGTGGAGATGTCAAGTTAAATACTTCACCAAAGGCTACCGATCATGAGACGAACGAAATGATTTCTGAGCACCTTGATTCCAACAAAACGAAAGGCAGAAAACAGGTTGACCGTTCCTCGTGTGGTTCCAACACAGCCTCAAGCAGCGATGTGGAAACTGATGCACTAGGGAAGGATGAGAAAGGGAAGGAAGAGCCTGAAACTCCCGATGCTAACCATTTAGCCATTGAGTTTAGTAATCGTCGTAGAAGCATTTGCAACCTTACCGATTCTTGGAAAGAGGTCTCTGAAGAGGGGAAACTAGCCTTTCAGGCTTTGTTCTCCAGAGAGGTGTTACCTCAAAGCTTTTCACCTCCTCATGCTTTAACGAATAAGGACCAAATGGGCATCACCAATGATAACCAGCAAACCATAGATGACAGAAATGAAGACCTTGAAAGCAAGAAATGCAGTTCTAACTATAAACCAATGCAGAAAAATTCGCCATTTGTAGAAAATAATGTGGGACTGTTAACCTTAGGGCTTGGACAAGGAAAGCTTAAGACTCGTCGAACAGGCTTTAAACCCTACAAAAGATGTTCCATGGAGGCCAAGGAAAATAGGGTTGGAGCGAGCAATCAAGGTGAAGAGAAATGTTGTAAGAGAATACGTTTGGAAGGGGATACTTCGACTTGA 2250 0.4302 MDAYSSGEEVVVKTRKPYTITKQRERWTEEEHNRFLEALKLHGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEKEALVKGVPIGQALDIDIPPPRPKRKPSNPYPRKTRIGTATLHSGAKDGKINLVEFSHDNQALDLEKEPVPEIYDLDEGLTTVKENKDENCSKVFTVIQEVPCSSLSSANRSSISMSVPLGNSSVFKETTTSVKEVITPDDKTESFLTVELENGNLEINGGKQANGTSKNSTIENSDALQMKLVQNEKTDGLDSALTIEGMQGNNQNYPRHVTVHVVDGNLGTCTQNPSQDMLFRDCMFQPIGGANGQPNLFTNSAPSNTRESQNNTAQSSAHQSFLPYPPFTQHNQDDYQSFLHMSSTFSNLIVSTLLQNPAAHAAASFAATFWPYANPETSADSPRCSQGGFTSRHIGSPPSVAAIAAATVAAATAWWATHGLLPLCAPLHTVFACPPASVTAVPSMNTSETPSLKAEQEKSTLQNPPLHDQMMHPEYSEAPQAQHSASKSLAVISSDSESGDVKLNTSPKATDHETNEMISEHLDSNKTKGRKQVDRSSCGSNTASSSDVETDALGKDEKGKEEPETPDANHLAIEFSNRRRSICNLTDSWKEVSEEGKLAFQALFSREVLPQSFSPPHALTNKDQMGITNDNQQTIDDRNEDLESKKCSSNYKPMQKNSPFVENNVGLLTLGLGQGKLKTRRTGFKPYKRCSMEAKENRVGASNQGEEKCCKRIRLEGDTST 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2704g00003 749 ProSiteProfiles SANT domain profile. 22 73 IPR017884 -
Vium2704g00003 749 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Vium2704g00003 749 MobiDBLite consensus disorder prediction 562 577 - -
Vium2704g00003 749 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Vium2704g00003 749 MobiDBLite consensus disorder prediction 578 596 - -
Vium2704g00003 749 Pfam Myb-like DNA-binding domain 24 67 IPR001005 -
Vium2704g00003 749 SMART sant 23 71 IPR001005 -
Vium2704g00003 749 MobiDBLite consensus disorder prediction 507 533 - -
Vium2704g00003 749 MobiDBLite consensus disorder prediction 470 601 - -
Vium2704g00003 749 MobiDBLite consensus disorder prediction 470 494 - -
Vium2704g00003 749 Gene3D - 26 73 - -
Vium2704g00003 749 MobiDBLite consensus disorder prediction 319 354 - -
Vium2704g00003 749 PANTHER SWI/SNF COMPLEX-RELATED 7 644 - -
Vium2704g00003 749 CDD SANT 26 69 IPR001005 -
Vium2704g00003 749 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Vium2704g00003 749 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Vium2704g00003 749 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Vium2704g00003 749 MobiDBLite consensus disorder prediction 534 561 - -
Vium2704g00003 749 MobiDBLite consensus disorder prediction 87 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2704g00003 Vium-Chr2704 4109 13595 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vium2704g00003 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2704g00003 K12133 - gmx:100101859 1223.38