Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium269g00002 ATGGCAGCAGAAATGGTTACCGGTGCTCTTGTTTCTACTTTCCTCGAGAGGACTATCGATACTTTGGCTTCCCGTCTTCTCTACATATTTCCTCAAAGAAAGCACAAGAAGCAACTCAGCAACTTGAAGATGAAGCTCCTTGCCATTGATGTTGTGGCTCTTGATGCAGAACAAAAGCAGTTCACAGATCCACGCGTCAGAAATTGGCTTCTCAAGACCAAAGATGTTGTCTTTGATGCAGAAGATATCTTGGATGAGATGGATTATGAACTCTCCAAAAGCCAGGCGGAAGCTGAGTCTCAGAGTGTTACTAAAAAGGTGTGGAATTCNTTTGTCGGCCCTTNGTTTAACTGGCTCACATCGGACACTCATAACAACTTATCTATACTTTCTATTGTGGGCATGGGTGGGATGGGTAAGACCTCTCTTGTTCAACATGTGTTCAATGACCCAAGGCTTGAAGGTAAATTTGATACTAAAGTTTGGGTCAGTGTTCCACAGAAATTTGATGTACTGAAATTATCAAGAGCAATTCTTGACACAATAACAGGTTCAGCTGATCACAGTATACATCAGGAAGTAATTCAGAAAAGACTGAAAGAAGAACTTATGGGGAAGAAATTTCTTCTCGTTTTGGATGATGTTTGGAACGAAAGACCATCTAAATGGGAAGATGTGCAGAAGACCCTAGTTTTCGGAGGTCAAGGCAGTAGGCTTCTTGTCACTACACGGAGTGAGAAGGTTGCTATTACCATGCGATCAGAGAAGCACCTGCTGCAGGTATTAAAAGAAGATTATTGTTGGAACTTGTTCGCAAAGCATGCATTCGAAAATGCTAATCCGCAACCAGATCCAGACTTCATAGAGATTGGTAAGAAGATAGTTGAAAAATGTAATGGACTTCCTTTAGCCTTAAAAACTATGGGAAGTCTGTTACACAATAAATCATCTCTTTGGGAATGGGAAAGTATTATGAAAAGTGAGATATGGCATCTTTCAGAAAATGAAAGTGATATACTCCCTGCTTTAAAACTGAGCTATTTCCACCTTCCTTCTCATTTGAAGAAATGCTTTGCTTTTTGTGCCTTATTTCCCAGAGGTTATCGGTTTGACAAGGAGTATTTAATTCAATTGTGGATGGCTCAAAATTTTCTAGAAAACCCTTTACAGAAAAAGAGTCCTAAAGAAGTTGGTGATGAATATTTCAATGATCTATTATCTTGGTCCTTCTTTCAACGGTCAAGCAACGAAGAGAAAAAGCGTTTTATCATGCATGACCTTCTAAATGATTTGGCAAAATACGTCTGTGAGGACATATGCATCAGGTTAGGAGTTGATGAACCAAAAGGTATACCCAAAACAACCCGTCATTGTTCATTTTCATCCTCTAAATTATGTTTTGATGGGTTTGGGAGTTCGATTGATACTCAAAAGTTGCATACATTTAAGCCAACAGATGAGGGTTGGGTTTGGGATTGCAAGATGTCGATAGATGACTTGTTCTCCAGATTTAAGTTCATTCGTGTGATATCTTTGAATCATTGTCGTAACCTTACAGAGGTGCCTCAATCTATTGGAAATCTTATTCATCTTCGTTCAATAGATCTATCCTGGACTGAAATAGAAAAACTACCCGATTCAATAAGTTCACTCTACAAGTTGCAAACACTGAAGCTGAACTATTGTCATAGATTAAAGGAGCTTCCTTCATGTTTACATCAACTTGACAATTTACGTTGTCTTGAATTAGTAGCTATTGGAGTGAAAAATGTGGTAGCATATTTGGGAAAGCTGAAGAATGTTCAAGTGTCGATGAGTTCATTTCATGTTGAGAAAAGTAAGGAAATGAATATTCAGCAATTAGGAGAACTCAATCTTCATGGAAGCCTAACAATTGATGATCTGCAGAATATTGAGAATCCCTCTGATACAATGAAAGTAGATTTGAAGAACAAACCACACCTTGTAGACCTACGGTTAGTATGGAATTTCATTGGCAGCTCCTCTGTTGATTCAGAAAAAGCTGAGGATGTAATTGAAAATCTACGACCTTCAAAATACTTGAAGGAGTTGTCAATAAGTAACTATATTGGTAAACAATTTCCAAATTGGTTACTCGATAATTCATTACCGAATCTGGTGTCCTTAGTGTTGAAGGGATGTGAATCTTGCCAACGGTTACCTCCGCTTGGACTTTTGCCATTTCTCAATTACTTGAGCCTTTCAGGGTTTAATGAGATAGTGAGTATCGATGCTGATTTTCATGGGAACAACTCTTCTTCATTTAAATCCCTTCAAGAATTGTATTTGTATGATATGAGGCAATGGGAAAAGTGGGAATGCCAAGCTGTGACAGGTGCTTTTCCACGTTTACAACGTCTATGGATACAAAATTGTCCCAAGCTGAAAGGACACCTGCCAAAGTTCGTTGCTTTAAAATCTCTATATGTCTTTAACTGCGAACAACTCGAAGTTCTGATTGTGAGTGTGATAGAATTACGTCTAGAAGAGTGTGGAAAGCTGCAGTTGGAGCGGTCTACAATGAAAAAGCTCACAACGGATGGGCACGGCATGGCAGCATCATTGGTGGCAACTGTTGGACATATGTTATTCGACACTTCTCTTGAAATCTTGTACATTGGTTCAGCTCTGGAGTCAAAAAGTCATGACTGTGTCTCTCTAAAGATCTTTCCACTGGATTTTTTCCCAACACTCAGGACCCTTAAACTCGGTGGGTTTCCTGATCTACAGATAATCTCACAGGATCATGTTCACAATCATCTCCAGGATCTGACAATCAAAGACTGTCCAAGACTTGAGTTGTTCCCTGAAGGAGGTTTGCCATCAAATCTAATGGACATCCAACTCATTAATTGCTTTAGACTTGTTGGCTCACTGAAAAGAGTTTTCGGAGACAGTTCTTCGTTGGAAAGTTTAAGGATTGAAAAAGTAGAGGCGGAATGTTTTCCTGATGAAGGTTTGCTTCCACTCTCTCTTTCCTCTTTAATAATATCTGATTGTCCAAATCTAAACAAACTGAACTACAAGGCTCTCTTAGAACTCTCATCTCTTCGAACACTGCGTCTTTGGCACTGTCCCAACCTCCAATGCTTACCAGAGGAGGGTCTTCCCAAATCAATTTCATCTCTTCATATACACGACTGTCCTTTGCTGAAACAGCGTTACCATGAAGGAGGCGAAGACAGGAAAAAGATTGCTCACATTCGATACATATTTATATGGTAG 3246 0.3931 MAAEMVTGALVSTFLERTIDTLASRLLYIFPQRKHKKQLSNLKMKLLAIDVVALDAEQKQFTDPRVRNWLLKTKDVVFDAEDILDEMDYELSKSQAEAESQSVTKKVWNSFVGPXFNWLTSDTHNNLSILSIVGMGGMGKTSLVQHVFNDPRLEGKFDTKVWVSVPQKFDVLKLSRAILDTITGSADHSIHQEVIQKRLKEELMGKKFLLVLDDVWNERPSKWEDVQKTLVFGGQGSRLLVTTRSEKVAITMRSEKHLLQVLKEDYCWNLFAKHAFENANPQPDPDFIEIGKKIVEKCNGLPLALKTMGSLLHNKSSLWEWESIMKSEIWHLSENESDILPALKLSYFHLPSHLKKCFAFCALFPRGYRFDKEYLIQLWMAQNFLENPLQKKSPKEVGDEYFNDLLSWSFFQRSSNEEKKRFIMHDLLNDLAKYVCEDICIRLGVDEPKGIPKTTRHCSFSSSKLCFDGFGSSIDTQKLHTFKPTDEGWVWDCKMSIDDLFSRFKFIRVISLNHCRNLTEVPQSIGNLIHLRSIDLSWTEIEKLPDSISSLYKLQTLKLNYCHRLKELPSCLHQLDNLRCLELVAIGVKNVVAYLGKLKNVQVSMSSFHVEKSKEMNIQQLGELNLHGSLTIDDLQNIENPSDTMKVDLKNKPHLVDLRLVWNFIGSSSVDSEKAEDVIENLRPSKYLKELSISNYIGKQFPNWLLDNSLPNLVSLVLKGCESCQRLPPLGLLPFLNYLSLSGFNEIVSIDADFHGNNSSSFKSLQELYLYDMRQWEKWECQAVTGAFPRLQRLWIQNCPKLKGHLPKFVALKSLYVFNCEQLEVLIVSVIELRLEECGKLQLERSTMKKLTTDGHGMAASLVATVGHMLFDTSLEILYIGSALESKSHDCVSLKIFPLDFFPTLRTLKLGGFPDLQIISQDHVHNHLQDLTIKDCPRLELFPEGGLPSNLMDIQLINCFRLVGSLKRVFGDSSSLESLRIEKVEAECFPDEGLLPLSLSSLIISDCPNLNKLNYKALLELSSLRTLRLWHCPNLQCLPEEGLPKSISSLHIHDCPLLKQRYHEGGEDRKKIAHIRYIFIW 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium269g00002 1081 Gene3D - 11 113 - -
Vium269g00002 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 361 IPR027417 -
Vium269g00002 1081 Gene3D - 262 345 IPR042197 -
Vium269g00002 1081 Gene3D - 346 434 IPR036388 -
Vium269g00002 1081 Gene3D Ribonuclease Inhibitor 491 860 IPR032675 -
Vium269g00002 1081 Gene3D - 115 261 IPR027417 -
Vium269g00002 1081 PRINTS Disease resistance protein signature 202 216 - -
Vium269g00002 1081 PRINTS Disease resistance protein signature 298 312 - -
Vium269g00002 1081 PRINTS Disease resistance protein signature 549 565 - -
Vium269g00002 1081 PRINTS Disease resistance protein signature 129 144 - -
Vium269g00002 1081 Gene3D Ribonuclease Inhibitor 863 1078 IPR032675 -
Vium269g00002 1081 Pfam Rx N-terminal domain 11 101 IPR041118 -
Vium269g00002 1081 SUPERFAMILY L domain-like 891 1075 - -
Vium269g00002 1081 PANTHER DISEASE RESISTANCE PROTEIN RP 42 930 IPR044974 GO:0006952
Vium269g00002 1081 SUPERFAMILY L domain-like 424 829 - -
Vium269g00002 1081 Pfam NB-ARC domain 117 327 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium269g00002 Vium-Chr269 16918 21630 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium269g00002 126 770 WRKY Transcription Factor Family AT5G45050 23.266 3.76e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium269g00002 - - var:108338879 1598.56