Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium269g00001 ATGTTTAAGGAAGATATATTGTCGGCTATTTGCATAAATTTTTCCTTNAATTCTTCTTTTGTCAGTTTCTTTGAAATAGAAATTGAATCCAGGATGGAACAAGTCATTGAGGACCTAGAAGATCTTGCAAACGAAAGCTATATTCTAGGTTTGGAAAAGTGTGGTGGTGCTGTGGTTGGATCAGGATCGGGTAGTAATATAACATATACATCTTTGCCAAATGAAAGTGTTATCTATGGCAGAGATGATGACAAAGAATTTGTGTTTAACTGGCTCACATCGGACACTCATAACAACTTATCTATACTTTCTATTGTGGGCATGGGTGGGATGGGTAAGACCTCTCTTGTTCAACATGTGTTCAATGACCCAAGGCTTGAAGGTAAATTTGATACTAAAGTTTGGGTCAGTGTTCCACAGAAATTTGATGTACTGAAATTATCAAGAGCAATTCTTGACACAATAACAGGTTCAGCTGATCACAGTATACATCAGGAAGTAATTCAGAAAAGACTGAAAGAAGAACTTATGGGGAAGAAATTTCTTCTCGTTTTGGATGATGTTTGGAACGAAAGACCATCTAAATGGGAAGATGTGCAGAAGACCCTAGTTTTCGGAGGTCAAGGCAGTAGGCTTCTTGTCACTACACGGAGTGAGAAGGTTGCTATTACCATGCGATCAGAGAAGCACCTGCTGCAGGTATTAAAAGAAGATTATTGTTGGAACTTGTTCGCAAAGCATGCATTCGAAAATGCTAATCCGCAACCAGATCCAGACTTCATAGAGATTGGTAAGAAGATAGTTGAAAAATGTAATGGACTTCCTTTAGCCTTAAAAACTATGGGAAGTCTGTTACACAATAAATCATCTCTTTGGGAATGGGAAAGTATTATGAAAAGTGAGATATGGCATCTTTCAGAAAATGAAAGTGATATACTCCCTGCTTTAAAACTGAGCTATTTCCACCTTCCTTCTCATTTGAAGAAATGCTTTGCTTTTTGTGCCTTATTTCCCAGAGGTTATCGGTTTGACAAGGAGTATTTAATTCAATTGTGGATGGCTCAAAATTTTCTAGAAAACCCTTTACAGAAAAAGAGTCCTAAAGAAGTTGGTGATGAATATTTCAATGATCTATTATCTTGGTCCTTCTTTCAACGGTCAAGCAACGAAGAGAAAAAGCGTTTTATCATGCATGACCTTCTAAATGATTTGGCAAAATACGTCTGTGAGGACATATGCATCAGGTTAGGAGTTGATGAACCAAAAGGTATACCCAAAACAACCCGTCATTGTTCATTTTCAACCTCTAAATTATGTTTTGATGGGTTTGGGAGTTCCATTGACACTCAAAAGTTGCATACATTTACCCCAAGAGATTGGGGTTGGGATTGGAATTGCAAGATGTCGATAGTTGACTTGTTCTCCAAATTTAAGTTCATACGTGTCTTATCTTTGTCTCATTATCGTAACCTTAGGGAGGTGCCTGAATCTGTAGGAAATCTTAAGCATCTCCGTTCATTAGATCTATCCTATACTGATATAGAAAAACTACCTGACTCAATAAGTTTACTCTACAAGTTGCAAATATTGCAGTTGAACTATTGTCAAAGATTAAAGCAGCTTCCCTTATATTTACATCAACTCGACAATTTACGTTGCCTTGAATTTATAAAAACAGCAGTGAAAAATGTACCAGCTCATTTGGGAAAGTTGAAGAATCTCCAAGTATTGATGAGTTCCTTTTACATTGAGAAAGGTAAGGAATTCAGTATTAAGCATTTGCGAGAACTCAGTCTTCATGGAAGTCTAACACTTGATGATCTGCAGAATATTGAGAATCCCTCTTATGCATTAGAAGTAGATTTGAAGAACAAACCACACCTTGTGGACCTACGGTTAAAATGGAATTTCATTGGCAGCTCCTCTGTTGATCCAGCAAAAGTCGGAAGCGTAATTGAGAATCTACGACCTTCAAAATACTTGAAGAAGTTGTCGATAAAGAACTATATTGGTAAACAATTTCCAAATTGGTTACTCCATAATTCATTACCGAATCTGGTGTCCTTAGTGTTGGAGGAATGTGAATCTTGCCAACGTTTACCTCCGCTTGGACTTTTGCCATTTCTAAAGAAATTGGAGATTTCAGGGTTTGATGAAATAGTGAGTATTGATGCTGATTTTCATGGGAACGACTCTTGTTCATTTAAATCCCTTCAAACATTGTATTTCTCTAATATGAGACAATGGGAGAAGTGGGACTGCCAAGCTGTGACAGGTGCTTTTCCACGTCTACAACTTTTTTCCATAGAAAATTGTCCGAAGCTGAAAGGATACCTGCCAAAGTTCGTTGCTTTAAAAACTCTAAGTGTGATTCACTGCCAACAACTTGAAGCTTTGATTGTCAGTGCGGTGGAATTACGTCTAGAAGACTGTGGAAAGCTGGATGAGCACGGCATGGCAGCATCATTGGTGGCAATTGTTGGACATATGCTATTCGACACTTCTCTTGAAAACTTATCCATTTCTTCAGCTCTGGAGTCAAAAAGTGATGACTATGTCTATCTAAGGATCTTTCCATTGGATTTCTTCCCGACACTCAAGAGCCTTAAACTCAGTAGGTTTCCTAATCTACTGATGATTTCACAGGATCAAGTTCACAATCATCTCCAGTATCTGGAAATCAAAGAGTGCCCTAAATTTGAATCATTGCCTGCAAACATGCATATGCTGCTCCCATCTCTCACGAGGCTATGGATAGAAGACTGTCCAAGACTTGCGTCATTCCCTGAGGGAAGTTTGCCATCAAATCTAAAGTACATAACACTCTATAATTGCTTTAGACTTGTTGGCTTACTGAAGGGAGCTTTGGGAGACAGTTCTTCATTGGAAAGGCTGGGGATATCAACACCAGATGCAGAATGTTTTCCTGATGAAGGTTTGCTTCCACTCTCTCTTTCCTTTCTAATAATATCTGATTGTCGAAATCTAAAAAAACTGAACTATAAGGGTCTCTTAGAACTCTCATCTCTTAGAAGACTGAATCTTTGGAAATGTCCCAACCTCCAATGCTTACCAGAGGAGGGTCTTCCCAAATCAATTTCATTTCTTGAAATACGGGAGTGTTCTTTGCTGGAACAGCGTTGCCATAAACGAGGCAAAGACAGGGGAAAGATTGCTCACATTCGAAAAGTATTTATGTCTCGGATACTTTAA 3213 0.3831 MFKEDILSAICINFSXNSSFVSFFEIEIESRMEQVIEDLEDLANESYILGLEKCGGAVVGSGSGSNITYTSLPNESVIYGRDDDKEFVFNWLTSDTHNNLSILSIVGMGGMGKTSLVQHVFNDPRLEGKFDTKVWVSVPQKFDVLKLSRAILDTITGSADHSIHQEVIQKRLKEELMGKKFLLVLDDVWNERPSKWEDVQKTLVFGGQGSRLLVTTRSEKVAITMRSEKHLLQVLKEDYCWNLFAKHAFENANPQPDPDFIEIGKKIVEKCNGLPLALKTMGSLLHNKSSLWEWESIMKSEIWHLSENESDILPALKLSYFHLPSHLKKCFAFCALFPRGYRFDKEYLIQLWMAQNFLENPLQKKSPKEVGDEYFNDLLSWSFFQRSSNEEKKRFIMHDLLNDLAKYVCEDICIRLGVDEPKGIPKTTRHCSFSTSKLCFDGFGSSIDTQKLHTFTPRDWGWDWNCKMSIVDLFSKFKFIRVLSLSHYRNLREVPESVGNLKHLRSLDLSYTDIEKLPDSISLLYKLQILQLNYCQRLKQLPLYLHQLDNLRCLEFIKTAVKNVPAHLGKLKNLQVLMSSFYIEKGKEFSIKHLRELSLHGSLTLDDLQNIENPSYALEVDLKNKPHLVDLRLKWNFIGSSSVDPAKVGSVIENLRPSKYLKKLSIKNYIGKQFPNWLLHNSLPNLVSLVLEECESCQRLPPLGLLPFLKKLEISGFDEIVSIDADFHGNDSCSFKSLQTLYFSNMRQWEKWDCQAVTGAFPRLQLFSIENCPKLKGYLPKFVALKTLSVIHCQQLEALIVSAVELRLEDCGKLDEHGMAASLVAIVGHMLFDTSLENLSISSALESKSDDYVYLRIFPLDFFPTLKSLKLSRFPNLLMISQDQVHNHLQYLEIKECPKFESLPANMHMLLPSLTRLWIEDCPRLASFPEGSLPSNLKYITLYNCFRLVGLLKGALGDSSSLERLGISTPDAECFPDEGLLPLSLSFLIISDCRNLKKLNYKGLLELSSLRRLNLWKCPNLQCLPEEGLPKSISFLEIRECSLLEQRCHKRGKDRGKIAHIRKVFMSRIL 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium269g00001 1070 FunFam Probable disease resistance protein At1g61300 65 230 - -
Vium269g00001 1070 Pfam NB-ARC domain 82 300 IPR002182 GO:0043531
Vium269g00001 1070 Coils Coil 25 45 - -
Vium269g00001 1070 SUPERFAMILY L domain-like 397 794 - -
Vium269g00001 1070 Gene3D - 63 234 IPR027417 -
Vium269g00001 1070 Gene3D Ribonuclease Inhibitor 835 1060 IPR032675 -
Vium269g00001 1070 Gene3D - 319 407 IPR036388 -
Vium269g00001 1070 ProSiteProfiles Leucine-rich repeat profile. 503 524 IPR001611 GO:0005515
Vium269g00001 1070 Gene3D Ribonuclease Inhibitor 462 826 IPR032675 -
Vium269g00001 1070 PRINTS Disease resistance protein signature 271 285 - -
Vium269g00001 1070 PRINTS Disease resistance protein signature 175 189 - -
Vium269g00001 1070 PRINTS Disease resistance protein signature 102 117 - -
Vium269g00001 1070 PRINTS Disease resistance protein signature 499 515 - -
Vium269g00001 1070 SUPERFAMILY RNI-like 731 968 - -
Vium269g00001 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 334 IPR027417 -
Vium269g00001 1070 Gene3D - 235 318 IPR042197 -
Vium269g00001 1070 PANTHER DISEASE RESISTANCE PROTEIN RP 29 811 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium269g00001 Vium-Chr269 11366 15096 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium269g00001 99 725 WRKY Transcription Factor Family AT5G45050 22.639 1.96e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium269g00001 - - var:108338879 1606.65