LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium2697g00007	ATGTTGGGAGAAGAGAGTAACAACGCCGACACCGGTGTTCACTGGAGAGCACATTCCAGATCAGTTTCTTGGACGGACCAGACTCCGGTGGTCCGGAAACCGCCGCGATCCCTTCAGCCTCTTTGCATCAGGAAAGACAGCGTGAAGGAGTGGCCGAGCGCCGGCAGCGACGATCTCGAGGTTTGGCTTCCGCCACCGACCCCAAGAGGGTCCACCAAAGGATCATCAAATTTGGGTTCGGGTTCGGGTCAAGTTTTTCAGCTTAGGAGAGACAAGTTGGCTTTCTACGACAAGGAATGTTCGAAAATCGCGGAGCACGTGTACTTAGGAAGTGACACGGTGGCAAAGAACGAGGAGGTTTTGCGGCGGCACGGGATAACGCACGTGCTGAATTGCGTGGGGTTCGTTTGCCCCGAGTATTTCAAAAGCGACTTCGTCTACAAAACGCTATGGCTGCGGGACAGTCCCTCGGAGGACATCACAAGCATTCTCTACGACGTTTTCGATTACTTCGAGGATGTCCGACAACAGGGTGGGCGCGTGCTCGTACACTGCTGCCAGGGCGTGTCACGCTCCACCTCGTTGGTCATCGCGTATCTCATGTGGAGGGAGAATCAGAGCTTCGAGGACGCGTTTCACATCGTTAAGAACGCGCGTGGCATCATCAATCCGAACATGGGTTTCGCTTGTCAGCTATTGCAGTGTCAGAAGCGCGTGCACGCTACGCCCCCGAGTCCTAGTTCTGTGCTCAGAATGTATAGGATGGCTCCTCATTCTCCCTACGACCCTCTTCACCTTGTTCCTAAGATGGTCAACAACCCTTGCGCCCACGCGCTTGATTCGCGTGGGGCGTTTATTGTGCATGTTTCTTGTACTTTGTATGTGTGGGTTGGGAAGGAGTGTGGCACGGTGATGTGTTGCAAGGCGCGTCATGCAGCTGCTCAGGTTGTTCGATACGAGAGGGCGACTGGGGAGATCGTTACCGTGGTTGAGGATGAAGAGCCTGAGGAGTTTTGGGTTGCTCTTTCTCACAGGCATGAAGAGGTGAAGAACGTTGAAACAATGGAGGTTGATGTAGGGATTCATCCCCGGAGAGTTGAGGAGTATGATTTGGACTTTGGAATTTTTCACAAGGCACTTTCTGGTGGGGTTGTTCCACCCTTTTCTTTGTCCAAGGCTGGATCAGAAAATTGCCTCCCTTCTAAGGAAAATGGGTGGGGGAGATTGACTTGGAAGCTTAGTGGAAGTACCATGAAAGGGTTCACATCCTCCAATATGAACATTGTAGAGGAAAATCACCACATGAATGTTGATCCTTTGCCTTCATCTTCTAAACCCTTTTACGATGAAGATGCGTCTGACTCAAAGATTTGCCCTTTACTTCAAAAAGAAGGTGTATCTTCATCTCCAGAGGCATTTTTGGCTAATCAGACCTTGGTAAGGGAAGAGTCTAGTTTAGCGTTCAAAGGGTCTAAACCCTCCTTTGCGGAGTGCAGAGGGACTAACCTGCCACCTCGTACGGTGCTACTCTCGACCGGCAACAGTAAGGTCCGAGTAAGATCTAAGTCAATCTCATTACCTGCCTTGGATGATACTTTGTTGAGTGATGTTAGTTGCGAGCAATTCGACCATGAAAACAGTGCAAAATAG	1650	0.5067	MLGEESNNADTGVHWRAHSRSVSWTDQTPVVRKPPRSLQPLCIRKDSVKEWPSAGSDDLEVWLPPPTPRGSTKGSSNLGSGSGQVFQLRRDKLAFYDKECSKIAEHVYLGSDTVAKNEEVLRRHGITHVLNCVGFVCPEYFKSDFVYKTLWLRDSPSEDITSILYDVFDYFEDVRQQGGRVLVHCCQGVSRSTSLVIAYLMWRENQSFEDAFHIVKNARGIINPNMGFACQLLQCQKRVHATPPSPSSVLRMYRMAPHSPYDPLHLVPKMVNNPCAHALDSRGAFIVHVSCTLYVWVGKECGTVMCCKARHAAAQVVRYERATGEIVTVVEDEEPEEFWVALSHRHEEVKNVETMEVDVGIHPRRVEEYDLDFGIFHKALSGGVVPPFSLSKAGSENCLPSKENGWGRLTWKLSGSTMKGFTSSNMNIVEENHHMNVDPLPSSSKPFYDEDASDSKICPLLQKEGVSSSPEAFLANQTLVREESSLAFKGSKPSFAECRGTNLPPRTVLLSTGNSKVRVRSKSISLPALDDTLLSDVSCEQFDHENSAK	549

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium2697g00007	549	Gene3D	Severin	251	349	IPR029006	-
	Vium2697g00007	549	MobiDBLite	consensus disorder prediction	51	83	-	-
	Vium2697g00007	549	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	158	219	IPR000387	GO:0016311\|GO:0016791
	Vium2697g00007	549	Gene3D	Protein tyrosine phosphatase superfamily	83	241	IPR029021	-
	Vium2697g00007	549	MobiDBLite	consensus disorder prediction	69	83	-	-
	Vium2697g00007	549	CDD	DSP	100	234	-	-
	Vium2697g00007	549	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	99	241	IPR020422	GO:0006470\|GO:0008138
	Vium2697g00007	549	PANTHER	MKPA PROTEIN	22	497	-	-
	Vium2697g00007	549	SMART	VILL_6	254	345	IPR007122	GO:0051015
	Vium2697g00007	549	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	89	241	IPR029021	-
	Vium2697g00007	549	ProSitePatterns	Tyrosine specific protein phosphatases active site.	183	193	IPR016130	GO:0016311\|GO:0016791
	Vium2697g00007	549	Pfam	Dual specificity phosphatase, catalytic domain	107	237	IPR000340	GO:0008138\|GO:0016311
	Vium2697g00007	549	SMART	dsp_5	99	238	IPR020422	GO:0006470\|GO:0008138
	Vium2697g00007	549	SUPERFAMILY	Actin depolymerizing proteins	245	345	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium2697g00007	Vium-Chr2697	72219	74239	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium2697g00007	34	135	Protein tyrosine phosphatase (PTP) family	AT3G55270	49.091	1.90e-25	109

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium2697g00007	-		-	vra:106766435	1102.43