Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2690g00001 ATGAGTTTTCAAGACATCCAAGGTGGACCCCACCCTCAATCTCGCCGGAACCAGTCGCCGGCGCAGGCCGTTGCTGCCGGAATTTTCCAGATCAACACTTCCGTCGCCACTTTCCGGCGACTCGTTGATGCCGTCGGAACCGTTAAAGACACTCCCGAACACCGTCAGAAGCTGCACAATACGAGGCAGAGGATATTGCAACAGGTGAAGGATACTTCTGCTAAGCTCAAATCCTTGAGTGAATCTGATCGTGGTGCTAATTCCAATGCTAGTCAGAAAATTGAAGATGCTAAGCTTGCTAGAGATTTTCAAACGACATTGCAAGAGTTTCAGAAAGTACAACAGCTTGCTTCTGAGCGAGAATCTGCTTACACCCCTGCCTCCGCCTCTTCTACTTTACCAATAAGCTCTGGCTCTGGTGAAGAATCGACTGGAATAGATGTCGAAAGTCAACCTTTTATTAGAGAGCAGAAGAGGCAAGAGATACTTCTATTGGATAATGAAATATCATTCAACGAGGCCATGATTGATGAAAGAGAACAAGGAATTAGAGAGGTAGAAGAGCAAATTGGACAAGCAAATGAAATATTCAAGGACCTTGCTGTTCTTGTTCATGATCAGGGAGTTGTTATTGATGACATTCAATCAAATATTGATGCTTCTGCTGGTGCAACAACCCAAGCTAGGGTCCAGCTAGCCAAGGCTTCCAAAAGTGTGAAAACCAAAACCTCATGGTGTTGGTGGGTGCTTGTAATTGTTGTTGTTGTGCTGGTCATATTACTTATTGTACTCATTCTTTAG 801 0.4457 MSFQDIQGGPHPQSRRNQSPAQAVAAGIFQINTSVATFRRLVDAVGTVKDTPEHRQKLHNTRQRILQQVKDTSAKLKSLSESDRGANSNASQKIEDAKLARDFQTTLQEFQKVQQLASERESAYTPASASSTLPISSGSGEESTGIDVESQPFIREQKRQEILLLDNEISFNEAMIDEREQGIREVEEQIGQANEIFKDLAVLVHDQGVVIDDIQSNIDASAGATTQARVQLAKASKSVKTKTSWCWWVLVIVVVVLVILLIVLIL 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2690g00001 266 PANTHER SYNTAXIN 21 254 IPR045242 -
Vium2690g00001 266 MobiDBLite consensus disorder prediction 119 146 - -
Vium2690g00001 266 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Vium2690g00001 266 FunFam Syntaxin-22 like 14 128 - -
Vium2690g00001 266 SUPERFAMILY t-snare proteins 19 228 IPR010989 GO:0016020|GO:0016192
Vium2690g00001 266 CDD SNARE_Qa 176 234 - -
Vium2690g00001 266 Gene3D - 167 266 - -
Vium2690g00001 266 Gene3D - 10 131 - -
Vium2690g00001 266 MobiDBLite consensus disorder prediction 1 21 - -
Vium2690g00001 266 FunFam Syntaxin-22 like 166 266 - -
Vium2690g00001 266 SMART tSNARE_6 168 235 IPR000727 -
Vium2690g00001 266 MobiDBLite consensus disorder prediction 119 147 - -
Vium2690g00001 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Vium2690g00001 266 Pfam SNARE domain 210 261 IPR000727 -
Vium2690g00001 266 SMART SynN_4 8 122 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2690g00001 Vium-Chr2690 18663 21269 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2690g00001 1 252 SNARE and Associated Proteins AT5G46860 56.977 7.76e-94 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2690g00001 - - gmx:100787141 427.943