Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2682g00061 ATGGCTTCTGCGGTGGCCGCCGCGGCGGGGCAAGAGTTGTCGAATCCTCCATCGGACGGAATAACGAATCTCCGATTCTCAAATCACAGCGATAATCTTTTGGTCTCCTCATGGGACAAGAGTGTGAGATTGTACGAAGCGAGCGCCAATGTGTTGAGAGGAGAGTTCATGCACGCTGGCCCCGTTCTCGATTGCTGCTTCCACGACGATTCCTCCGGCTTCAGTGTCGCCGCCGACAACACTGTTAGACGGCTTTTCTTCAGCTCTAATAAAGAGGATATCCTAGGAAGGCATGATGCGCCTGTTCGTTGTGTTGAGTACTCCTATGCTGCAGGGCAATTGATCACTGGTAGTTGGGACAAAACCCTGAAATGCTGGGACCCTAGAGGTACAAGTGGCCAAGAGCGCACACTCGTTGGGACATATCCACAGCCTGAGCGTGTTTACTCTCTCTCTCTGGTTGGAAATCGCCTGGTTGTAGCAACAGCTGGAAGACATGTTAATATCTATGATTTGAGGAACATGTCTCAACCTGAACAGAAAAGAGAATCTTCATTGAAATATCAAACTAGATGTGTGCGCTGTTACCCTAATGGAACAGGATATGCACTTAGTTCAGTGGAAGGGCGTGTCTCGATGGAATTCTTTGACCTCTCAGAAGCTATCCAGGCAAAAAAATATGCTTTCAAGTGTCACAGAAAATCCGAGGCCGGAAGGGACATTGTCTATCCCGTAAATGCAATTGCATACCACCCCATATATGGAACGTTTGCCACAGGTGGTTGTGACGGGTATGTTAACGTGTGGGACGGAAACAATAAGAAGAGGCTATACCAGTACACGAAATATCCTACCAGCATTGCTGCACTGTCGTTCAGCAGAGATGGACGCCTGTTGGCTGTTGCATCAAGTTACACATTCGAAGAAGGACCTAAAAGCAACGAATCAGATGCTATTTTCGTCCGTAGTGTAAACGAGATTGAGGTGAAGCCGAAGCCCAAAGTCTATCCCAATCCTCCAGCATAA 1026 0.4805 MASAVAAAAGQELSNPPSDGITNLRFSNHSDNLLVSSWDKSVRLYEASANVLRGEFMHAGPVLDCCFHDDSSGFSVAADNTVRRLFFSSNKEDILGRHDAPVRCVEYSYAAGQLITGSWDKTLKCWDPRGTSGQERTLVGTYPQPERVYSLSLVGNRLVVATAGRHVNIYDLRNMSQPEQKRESSLKYQTRCVRCYPNGTGYALSSVEGRVSMEFFDLSEAIQAKKYAFKCHRKSEAGRDIVYPVNAIAYHPIYGTFATGGCDGYVNVWDGNNKKRLYQYTKYPTSIAALSFSRDGRLLAVASSYTFEEGPKSNESDAIFVRSVNEIEVKPKPKVYPNPPA 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2682g00061 341 FunFam Mitotic checkpoint protein bub3, putative 6 334 - -
Vium2682g00061 341 SUPERFAMILY WD40 repeat-like 17 304 IPR036322 GO:0005515
Vium2682g00061 341 PANTHER MRNA EXPORT FACTOR AND BUB3 10 327 - -
Vium2682g00061 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 279 IPR001680 GO:0005515
Vium2682g00061 341 Pfam WD domain, G-beta repeat 19 45 IPR001680 GO:0005515
Vium2682g00061 341 Pfam WD domain, G-beta repeat 95 127 IPR001680 GO:0005515
Vium2682g00061 341 Pfam WD domain, G-beta repeat 229 270 IPR001680 GO:0005515
Vium2682g00061 341 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
Vium2682g00061 341 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Vium2682g00061 341 SMART WD40_4 6 46 IPR001680 GO:0005515
Vium2682g00061 341 SMART WD40_4 228 270 IPR001680 GO:0005515
Vium2682g00061 341 SMART WD40_4 88 127 IPR001680 GO:0005515
Vium2682g00061 341 SMART WD40_4 135 171 IPR001680 GO:0005515
Vium2682g00061 341 SMART WD40_4 49 86 IPR001680 GO:0005515
Vium2682g00061 341 Gene3D - 7 335 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2682g00061 Vium-Chr2682 342244 349333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2682g00061 74 279 Eukaryotic Initiation Factors Gene Family AT2G46280 27.230 1.06e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2682g00061 K02180 - gmx:100808389 637.491