Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2682g00058 ATGGAATCTTCTCAACAGATTTCCGAAGAATGGGGTTCTCTTTGTGGATTGCACACAACTGAAGAAGCTGACTTTATGGCTCAGTTGTTTGGTGGTACTCACTGTTCTGTCACAGAAAAGCACCACGGAAATACCACTTTTGGCTTTTGGCCGGCCCATGAATCCACAACAGTGACCATGAAAGCCACTAATAGCAACTCATACTTCCTTCCAAATGTTACAGACATTAATTTATGTTTCTCACAAGGGAGTAGCTCCAGCATTGACAGTGGTAATAGTGTATTGTCCACTACAAGTAGTGGACCCTACTACTGTGATCCAGCAACAAACTTTGACTCTGTGTCCATGGCCTTTTTCCTGGGAGATGCTCAATTCAGTCCCCATAGTTTTCACTGTTATGATAACTCAATAAATGAAAACACTGATGAAGAGTCAAGTCTAGACCCAGTAGCTCTTGCTGACAACAATTTGCAGGCTAAGAGGGAGTATGAGATGATGGTTTCTGAATATGCACACGAGGACAGAAGTGAAAACCTGGAGAATCTAACAAAAAGGCTTAGGAACTCAAAAGAGGTCTCAAAAACATTGAGGAATACCAAGTTGAAGAAAAATTCAAAATCTGCTTCGATGAACAAGAATGAAGATGACAGAAGCTTGAACCTCGAAGGGCTCGGCTGTTTTTCACAGGGTGACTCTAATGCTTCTCTGAAGCCAAATGGAGGAGCATTGAAAGATCCTGCACCTCCCAGTTTGCTTAGAAAATCAAGAGCAACTAAGGGTCCTGCTACTGATCCACAGAGCCTCTATGCAAGAAAGAGAAGAGAAAGAATAAATGAAAGGCTGAGAATACTGCAAAATCTTGTCCCCAACGGAACTAAGGTGGATATCAGCACCATGCTTGATGAAGCAGTGCAATACGTTAAGTTTTTACAGCTCCAAATCAAGCTTCTGAGCTCTGACGATATGTGGATGTATGCCCCAATTGCTTACAATGGTATAAACATTGGACTTGACCTCAGTATTTCTCCAACCAAAGGAAGATGA 1044 0.4205 MESSQQISEEWGSLCGLHTTEEADFMAQLFGGTHCSVTEKHHGNTTFGFWPAHESTTVTMKATNSNSYFLPNVTDINLCFSQGSSSSIDSGNSVLSTTSSGPYYCDPATNFDSVSMAFFLGDAQFSPHSFHCYDNSINENTDEESSLDPVALADNNLQAKREYEMMVSEYAHEDRSENLENLTKRLRNSKEVSKTLRNTKLKKNSKSASMNKNEDDRSLNLEGLGCFSQGDSNASLKPNGGALKDPAPPSLLRKSRATKGPATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLDEAVQYVKFLQLQIKLLSSDDMWMYAPIAYNGINIGLDLSISPTKGR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2682g00058 347 Gene3D - 264 326 IPR036638 GO:0046983
Vium2682g00058 347 MobiDBLite consensus disorder prediction 172 271 - -
Vium2682g00058 347 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 95 333 - -
Vium2682g00058 347 FunFam Basic helix-loop-helix transcription factor 262 319 - -
Vium2682g00058 347 MobiDBLite consensus disorder prediction 172 198 - -
Vium2682g00058 347 Coils Coil 172 199 - -
Vium2682g00058 347 SMART finulus 267 316 IPR011598 GO:0046983
Vium2682g00058 347 CDD bHLH_AtIND_like 262 324 - -
Vium2682g00058 347 Pfam Helix-loop-helix DNA-binding domain 271 311 IPR011598 GO:0046983
Vium2682g00058 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 310 IPR011598 GO:0046983
Vium2682g00058 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 327 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2682g00058 Vium-Chr2682 312236 313965 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2682g00058 10 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 37.895 1.61e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2682g00058 HLH 5.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2682g00058 - - gmx:100816788 491.886