Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2682g00057 ATGGATCCTACTGAGCAAATTTCTGAAGAATGGAGTTCTCTCAGTGGTTTTTGCACTGCTGAGGAAGCCGACTTCATGAGCCAGTTGCTTGACAACTGCTCGCTCCCTGAAAATCTGTGTGGAAATTTCCACTTGGGAATTCCGTCTGCGACATGGCCTGGCCATGAATCAACAATACTGACCGTGACAAGCATCAATGACAGTCCATATTTTCCTACAACCGCTGATAATAGTAATAGTAATTATTTATGTTTTTCACAAGGAAGTTGCTCCACTTCTGATAGTAGCAATATATTTCCTGCTACAAGTGGCAATAAACACTGCTTGAATGACCCAGTAGCCAACATTGGCTACGTGTCCATGGGTTTTGCCAAGTTCAGCCCATATAATGTACAAGGGAGTGACAGCCAACAGATGAATGAAAACACTGATCAAGATTTATGTCCAGAGGTTATTGCTGACAAGAACTCGCAGGATCACCAGGAATGTGAAGTACTAGTTTCTGAAGCAGCAACAGAGGATATAACCACCAATCTGGAGAAGTCGGGAAAAAGATCCAGGGGCTCAATGCAGGTACGAAAGAGCAAGAAAAATGCTAAATCCGTGAAGAAACCAAAATCTGATTCAATAAGTAACTCTGAAGAGGGTAGAAGTCCTGATCTTCAGGGTTGCTGCTCAGATGATGATGACTCCAATGCTTCTCAAGAGCTAAATGGAGGAGGATCTCCAAATCTGAGCCTGGAGGATTCTACATCCCTTAAGTTGAAGGGGAAAAAATCAACAGCTAGTAGAGGTTCTGCTACTGATCCACAAAGTGTATATGCAAGGAGAAGAAGAGAAAGAATAAATGAAAGATTGAAAATCCTACAAAACCTTGTCCCGAACGGAACCAAGGTGGATATCAGCACCATGCTTGAGGAAGCCGTTCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTTTGGATGTACGCTCCTATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATATTATCCCAACCAAACAGCCATAA 1059 0.4221 MDPTEQISEEWSSLSGFCTAEEADFMSQLLDNCSLPENLCGNFHLGIPSATWPGHESTILTVTSINDSPYFPTTADNSNSNYLCFSQGSCSTSDSSNIFPATSGNKHCLNDPVANIGYVSMGFAKFSPYNVQGSDSQQMNENTDQDLCPEVIADKNSQDHQECEVLVSEAATEDITTNLEKSGKRSRGSMQVRKSKKNAKSVKKPKSDSISNSEEGRSPDLQGCCSDDDDSNASQELNGGGSPNLSLEDSTSLKLKGKKSTASRGSATDPQSVYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNIIPTKQP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2682g00057 352 CDD bHLH_AtIND_like 267 329 - -
Vium2682g00057 352 FunFam Basic helix-loop-helix transcription factor 267 324 - -
Vium2682g00057 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Vium2682g00057 352 SMART finulus 272 321 IPR011598 GO:0046983
Vium2682g00057 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 331 IPR036638 GO:0046983
Vium2682g00057 352 Pfam Helix-loop-helix DNA-binding domain 276 316 IPR011598 GO:0046983
Vium2682g00057 352 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 87 324 IPR045843 GO:0003700|GO:0006355
Vium2682g00057 352 MobiDBLite consensus disorder prediction 176 278 - -
Vium2682g00057 352 MobiDBLite consensus disorder prediction 214 270 - -
Vium2682g00057 352 Gene3D - 266 323 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2682g00057 Vium-Chr2682 306570 308440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2682g00057 10 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 38.753 1.04e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2682g00057 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2682g00057 - - gmx:100817334 587.03