Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2682g00043 ATGTCTCACTCGCCGGACTCTCCCTCCGCCGCTGCTAACTTCCTCTGCCGCGAACACGCCAGCGACTTTACCTCCGACCACCATCCCCCGCCGACCCCTCCCTTTCCGGATTCCGATGACTCGCCCATCGCCGGCCTCCTCGACGCCGAGGTCCACCACATACCGGAGAAAGACTACCTCCGCCGCTGCCGCGACCGCTCCATCGACGTCACCGCGCGCCTCGACGCCGTCAACTGGATCTTAAAGGTTCACGCATTCTACAAGTTTTCTCCGGTGACGGCGTTTCTCTCCGTCAACTATTTGGACCGTTTCCTCTCTCTGTGTTCTCTTCCCCAATCGAGTGGGTGGCCGTTCCAGCTACTATCAGTGGCATGCCTGTCTCTGGCAGCAAAAATGGAAGAGTCTCACGTCCCGTTCTTACTGGACCTGCAACTGTTCGAACCCAAATTCGTGTTTGCTCCCAAAACGATTCAAAGAATGGAGCTTTGGGTCATGTCCAATCTCAAATGGAGACTTCGCTCCGTCACGCCCTACGATTATCTTAACCATTTCATCACCAAGCTCCCTTCCTCTTCTTCCTCCGAATCCACAACGCACTGTTTCTCCACCGCCTCCAATCTCATCCTCAGCACCACCCGTGTGATTAACTTCTTGGGATTCGCGCCCTCCACAGTGGCAGCCGCCGCCGTGCTCTGCTCGGCTGGCCGTGACATTGCTTCCACCAATGGCCCATTGCCGCCGAGTTTTCACAATAGAGTAAACGAGGAAATGGTGAGATGCTGTCACCAACTAATGGAGGAGTACGTGGTGGACACGTGTTACGCATCCAGCTCCACCATCAAAGAGAGAGTAGCCGAGCCGCCGCCATCCAGTCCCGTCGGCGTGCTGGACGCCGCCACCTGTGCCAGCTGCGACACACCTTCGGAGAGAATTTTCTTAAACTCGACAGAGGAACAACGGCGAGAAGCCGAGCCACCAAATAAACGGCTTCGATCCTCTGCTCCAGATGCACCGCAGCAGTAG 1023 0.566 MSHSPDSPSAAANFLCREHASDFTSDHHPPPTPPFPDSDDSPIAGLLDAEVHHIPEKDYLRRCRDRSIDVTARLDAVNWILKVHAFYKFSPVTAFLSVNYLDRFLSLCSLPQSSGWPFQLLSVACLSLAAKMEESHVPFLLDLQLFEPKFVFAPKTIQRMELWVMSNLKWRLRSVTPYDYLNHFITKLPSSSSSESTTHCFSTASNLILSTTRVINFLGFAPSTVAAAAVLCSAGRDIASTNGPLPPSFHNRVNEEMVRCCHQLMEEYVVDTCYASSSTIKERVAEPPPSSPVGVLDAATCASCDTPSERIFLNSTEEQRREAEPPNKRLRSSAPDAPQQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2682g00043 340 SUPERFAMILY Cyclin-like 37 172 IPR036915 -
Vium2682g00043 340 SUPERFAMILY Cyclin-like 177 271 IPR036915 -
Vium2682g00043 340 CDD CYCLIN_AtCycD-like_rpt2 175 265 - -
Vium2682g00043 340 Gene3D - 46 261 - -
Vium2682g00043 340 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Vium2682g00043 340 SMART Cyclin_C_2 175 304 IPR004367 -
Vium2682g00043 340 FunFam D6-type cyclin 170 263 - -
Vium2682g00043 340 MobiDBLite consensus disorder prediction 314 329 - -
Vium2682g00043 340 FunFam D2/4-type cyclin 56 169 - -
Vium2682g00043 340 MobiDBLite consensus disorder prediction 309 340 - -
Vium2682g00043 340 Gene3D - 56 173 - -
Vium2682g00043 340 Pfam Cyclin, C-terminal domain 175 276 IPR004367 -
Vium2682g00043 340 Pfam Cyclin, N-terminal domain 47 172 IPR006671 -
Vium2682g00043 340 PANTHER CYCLINS 47 275 IPR039361 -
Vium2682g00043 340 CDD CYCLIN_AtCycD-like_rpt1 72 170 - -
Vium2682g00043 340 SMART cyclin_7 78 166 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2682g00043 Vium-Chr2682 189819 191852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2682g00043 3 271 Core Cell Cycle Gene Families AT1G70210 42.909 5.82e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2682g00043 K18810 - gmx:100776178 484.567