Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2682g00006 ATGTCTTCGGATACAAAGAAAAGCCGTGGCCGTCAGAAGATCGAGATGAAGAAAATGAGCAACGAGAGCAACCTCCAAGTCACCTTCTCCAAACGCCGGACCGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGCTGCCGACGTTGCACTCGTTGTGTTCTCCCCCGGAGAGAAGGTCTTCTCCTTCGGTCACCCTAACGTCGACGCCGTCATTGACCGCTATCTCGCGCGGGCCCCGTCGCAGGACATGGGCACCATGCAGTTCATCGAGGCTCAGCGCCTGGCCAACGTGCGTGACCTCAACGCGCAGCTCACTCAGATCAACGCCCAATTGGAGGAGGGGAGGCAGCACGGGGAGGAGCTGAACCGCATTAAGAAGGAATCACAGGCCCAGCTATGGTGGGCCCAGCCCATCGAGAAAATGAGCCTGGCCCAGATGGAGCAGTACAAGGCGGCGTTGGAGGAGCTGAAGAAACTGGTTGCGCATCTTGCTGACAGGGCCATGCTTGAGACTGCAACAAACCAGGGTCGTCAGTTTTTTCCCGGGGCTCCTTCCTCTTCCAATCTGCTGCATTATCCACACCCTTCTCCGATGTTCCCCCAACCGCTGATTCAGCCACCCATGCTTCAGAACTTCATGTTTCCCGATGGGAGCATCTTAGGCCAGCAAGGGTTTAATCACATGGAAATGGGAGGATATGCACCTGGACCAGGACCCTCTGGTGCTTTCTTTTGA 744 0.5618 MSSDTKKSRGRQKIEMKKMSNESNLQVTFSKRRTGLFKKASELCTLCAADVALVVFSPGEKVFSFGHPNVDAVIDRYLARAPSQDMGTMQFIEAQRLANVRDLNAQLTQINAQLEEGRQHGEELNRIKKESQAQLWWAQPIEKMSLAQMEQYKAALEELKKLVAHLADRAMLETATNQGRQFFPGAPSSSNLLHYPHPSPMFPQPLIQPPMLQNFMFPDGSILGQQGFNHMEMGGYAPGPGPSGAFF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2682g00006 247 Gene3D - 21 88 IPR036879 GO:0003677|GO:0046983
Vium2682g00006 247 Coils Coil 149 169 - -
Vium2682g00006 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Vium2682g00006 247 FunFam Agamous-like MADS-box protein AGL62 21 86 - -
Vium2682g00006 247 Coils Coil 100 120 - -
Vium2682g00006 247 PANTHER MADS BOX PROTEIN 11 164 - -
Vium2682g00006 247 SUPERFAMILY SRF-like 10 82 IPR036879 GO:0003677|GO:0046983
Vium2682g00006 247 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Vium2682g00006 247 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Vium2682g00006 247 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Vium2682g00006 247 CDD MADS_MEF2_like 10 78 IPR033896 GO:0000977|GO:0045944
Vium2682g00006 247 Gene3D - 89 182 - -
Vium2682g00006 247 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Vium2682g00006 247 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2682g00006 Vium-Chr2682 54034 55342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2682g00006 5 190 Type I MADS-box Gene Family AT5G60440 53.439 4.51e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium2682g00006 SRF-TF 1.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2682g00006 - - gmx:100794751 323.939