Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2682g00005 ATGGCCATGGATTCAGGAGCAAAGAAAAGCCGTGGTCGCCAAAAGATCGAGATGAAGAAAATGAGCAATGAGAGCAACCTCCAAGTCACCTTCTCCAAGCGCCGAAGCGGCCTTTTCAAGAAGGCCAGTGAGCTCTGCACCCTCTGCGGAGCCCATGTGGCGCTGGTGGTGTTCTCGCCGGGAGAGAAGGTGTTCTCCTTCGGCCACCCCAACGTGGATGCTGTGATCGACCGCTTTCTGGGGCGGGCACCGGTGCAGGACTCCGGCACCATGCAGTTCATCGATGCCCACCGCATCTCCAACGTGCGTGACCTGAACAAGCAGCTGACTCAGGTGAACGAACTTCTGGAAACGGAGAGGAAGCGCGGAGAGGAGCTGAACCGGCTGAGGAAGGAGGCGCAGGAGCTGATGTGGTGGACCCGCCCCACTGAGGAGCTGACTGTGGAGCAGATGGAGCAGTACAAGACAGCATTGGAGGAGCTGAAGAAGCACGTTGCCCAACTTGCTGAGAGGGCAATGCTTCAGAGTGCTGTGAACCAGGGTCATCAGTTTTTCCCAGGGGCTTCTTCCTCTGCCAATTTCGTGCCTCAGCATCAGCCCCAGCATCAGCTTCAACCACAGCCTCCTCAGGTGTTCACTGCTCAGACCATCCCTACCATGCTTCAGAGCTATATGTTCCCTGATGTAACCATCATGCAGCAGCAGCATCACGGGTTCGATAACATGGGGATGGGAGGATATGGACCTGGACCTGCTCCTGCTGGGGGGTTTTTCTGA 777 0.5676 MAMDSGAKKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAHVALVVFSPGEKVFSFGHPNVDAVIDRFLGRAPVQDSGTMQFIDAHRISNVRDLNKQLTQVNELLETERKRGEELNRLRKEAQELMWWTRPTEELTVEQMEQYKTALEELKKHVAQLAERAMLQSAVNQGHQFFPGASSSANFVPQHQPQHQLQPQPPQVFTAQTIPTMLQSYMFPDVTIMQQQHHGFDNMGMGGYGPGPAPAGGFF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2682g00005 258 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Vium2682g00005 258 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Vium2682g00005 258 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Vium2682g00005 258 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Vium2682g00005 258 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Vium2682g00005 258 Gene3D - 91 183 - -
Vium2682g00005 258 CDD MADS_MEF2_like 12 80 IPR033896 GO:0000977|GO:0045944
Vium2682g00005 258 Gene3D - 23 90 IPR036879 GO:0003677|GO:0046983
Vium2682g00005 258 Coils Coil 99 136 - -
Vium2682g00005 258 Coils Coil 151 171 - -
Vium2682g00005 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 20 67 IPR002100 GO:0003677|GO:0046983
Vium2682g00005 258 SUPERFAMILY SRF-like 12 85 IPR036879 GO:0003677|GO:0046983
Vium2682g00005 258 PANTHER MADS BOX PROTEIN 13 168 - -
Vium2682g00005 258 MobiDBLite consensus disorder prediction 1 23 - -
Vium2682g00005 258 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2682g00005 Vium-Chr2682 43636 44423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2682g00005 7 191 Type I MADS-box Gene Family AT5G60440 57.979 9.96e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium2682g00005 SRF-TF 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2682g00005 - - pvu:PHAVU_007G047900g 446.817