Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2682g00004 ATGTCGAAGAATAAAAAGTGTAGTTTGGGTCGTCAAAAGATCCCAATAGAGAAAATACCCAAGAAGAGTCATTTGCAAGTGACTTTCTCTAAACGTCGTTCGGGAGTGTTCAAGAAAGCCAGCGAACTTTGCACCCTCTGTGGGGTAGAGATCGCCATCGTCGTTTTCTCTCCTGCAGACAAGGCCTTCTCTTTTGGCCATCCAGAAGTTGAGTCCCTCATCGATCGCTACACCATGCGGAACCCTCCACAAGATTCCAGTGCGCAGCACCTCGTTGAGGCTCATCGAAATGCGAATGTTCGTGATCTCAACATGCAACTCACTCAGGTTTTTAACCTTCTGGAGATTGAAAAGAAGCGAGGGGATGAACTGGATCATGTGAGGAAAGCCAGGCAGAAACAGTTTTGGTGGGAGAGCCCTGTCGATGACCTTGGATTGCATGAGCTTCTCCAGTTAAAGGCCTCCACTGAGGAACTCAAGAACAACATAGAAAAACATGCCAGCAAATTCATCATTGACCGCTCTACTGCTATATCTTCTTCGTCGATTCTTGGACCAAGTAATGGATTTGCTGCAATCGAACGCTATGACGCCTTTGATAACAAACCTGATGATGGGATTCCCATGGCCTCATCACCTCCCGATACTCATTATCTTGCTTTTCGAAATTGGTATCTTTGA 681 0.4611 MSKNKKCSLGRQKIPIEKIPKKSHLQVTFSKRRSGVFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESLIDRYTMRNPPQDSSAQHLVEAHRNANVRDLNMQLTQVFNLLEIEKKRGDELDHVRKARQKQFWWESPVDDLGLHELLQLKASTEELKNNIEKHASKFIIDRSTAISSSSILGPSNGFAAIERYDAFDNKPDDGIPMASSPPDTHYLAFRNWYL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2682g00004 226 Gene3D - 91 177 - -
Vium2682g00004 226 Coils Coil 149 169 - -
Vium2682g00004 226 PANTHER MADS BOX PROTEIN 11 166 - -
Vium2682g00004 226 FunFam Agamous-like MADS-box protein AGL62 21 87 - -
Vium2682g00004 226 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Vium2682g00004 226 Gene3D - 21 90 IPR036879 GO:0003677|GO:0046983
Vium2682g00004 226 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Vium2682g00004 226 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Vium2682g00004 226 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Vium2682g00004 226 CDD MADS_MEF2_like 10 77 IPR033896 GO:0000977|GO:0045944
Vium2682g00004 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Vium2682g00004 226 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Vium2682g00004 226 SUPERFAMILY SRF-like 10 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2682g00004 Vium-Chr2682 25666 26638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2682g00004 6 171 Type I MADS-box Gene Family AT5G60440 54.438 2.44e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vium2682g00004 SRF-TF 3.3e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2682g00004 - - gmx:100793705 374.015