Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2673g00001 ATGACTGAAGCAACATCACCAGCACCTCTCAAAGTTATCCAAGTTTGTTCGTTAGCACCGTTTCAGGAACCAACCCTTTCCACCCTTGTTCCAACCTCTCTTCCGCTAACCTTCTTCGACCTCTTATGGCTTCGATTTCCACCTGTTCAACGTCTCTTCTTCTATCACTTCCCACACCCAACCTCTTCTTTCCTTCATTCTCTTCTTCCCTCTCTCAAACTTTCTCTTTCTCTCACTCTCCAACACTTCCTCCCTTTCTCTGGCACTCTCACATGGCCCTCTCACTCTCCCAAACCCATCATCAACTATCTCCCCGGCGACACCGTTTCCTTCACTGTTGCTGAGTCCGACCTAAACTTCAACCATCTTTGCTCCCATCTCTGTGAAGCATCACAACGCAACGATTTAGCACCCCACTTGGCCAATTCCCATGATAAAGCATCTCTGTTGGCGGTTCAAGTCACTCTCTTCCCAAACGCTGGCTTTTGCATTGGAGTAACCACACACCATGCAGCTTTCGACGGAAAATCTTCATCCATGTTCATCAAAGCATGGGCCTATATATGCTCTAACCTTCAAAACCCTACTACACCCACACCAACACCATCCTTACCTCACCATCTTACGCCTATCTTTGACAGATCATTGATTAGAGACCCTTCTGGATTGGCTGAACTGTACGCAGAGCAGTGGATGAATCATAATGGTTCGAATAACCGAAGTCTCAAGGTGTGGGAGTCTCTCACTGCAACACCGAGCGATGGACTCAAAGGTTTGTTTGAATTGACCCCTTCACAGATTCAAAAGCTCAAACAATACGGAAACTCAAAGGTCAAAGTGGCTGTTCATCTGTCAACATTTTCTGTTACGTGTGCGTATGTGTTAGCGTGTTGGGTCAAAGCGAACCAAGTGAAGGATGAAAATGTGCTGTGCATATTTTCTGTTGACTGTAGAACGCGCTTGGATCCTCCAATTCCAGCCACGTATTTTGGAAACTGCGTTAAAGGAGAATTCGTTGTGGCTTTGACTAAGGAGTTGATTGGAAAAGATGGGTTCATTTGTGCTTTGGAGAGGATAGTTGAGGCTTTGAATAGGGTGAAGGAAGAGGGAGTTTTGAATGGAGCAGAAAAATGGGTTTCGAGTATGCATGACCCTGGGGAGGGTAGAATGATTTCTACTGCTGGGTCTCCGTTGTTTGAGGTTTATAGCATTGATTTTGGGTGGGGAAGGCCAAAGAAGGTGGATATGTTATCCACAGACAAAACAGGAGCATTTTCTCTCAGTGAAAGTAGGGATATCAGTGGAGGAATTGAGATTGGATTGCTGTTAAGTAAAAGTGAGATGGAAGATTTTACTTCCCTTTTTCTTCAAGGACTTGAT 1380 0.4514 MTEATSPAPLKVIQVCSLAPFQEPTLSTLVPTSLPLTFFDLLWLRFPPVQRLFFYHFPHPTSSFLHSLLPSLKLSLSLTLQHFLPFSGTLTWPSHSPKPIINYLPGDTVSFTVAESDLNFNHLCSHLCEASQRNDLAPHLANSHDKASLLAVQVTLFPNAGFCIGVTTHHAAFDGKSSSMFIKAWAYICSNLQNPTTPTPTPSLPHHLTPIFDRSLIRDPSGLAELYAEQWMNHNGSNNRSLKVWESLTATPSDGLKGLFELTPSQIQKLKQYGNSKVKVAVHLSTFSVTCAYVLACWVKANQVKDENVLCIFSVDCRTRLDPPIPATYFGNCVKGEFVVALTKELIGKDGFICALERIVEALNRVKEEGVLNGAEKWVSSMHDPGEGRMISTAGSPLFEVYSIDFGWGRPKKVDMLSTDKTGAFSLSESRDISGGIEIGLLLSKSEMEDFTSLFLQGLD 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2673g00001 460 Pfam Transferase family 33 453 - -
Vium2673g00001 460 SUPERFAMILY CoA-dependent acyltransferases 259 451 - -
Vium2673g00001 460 Gene3D - 251 460 IPR023213 -
Vium2673g00001 460 Gene3D - 10 243 IPR023213 -
Vium2673g00001 460 PANTHER - 10 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2673g00001 Vium-Chr2673 18037 19492 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2673g00001 52 457 Monolignol Biosynthesis Gene Families AT5G48930 24.941 5.30e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2673g00001 - - gmx:100800849 616.305