Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2672g00001 ATGGTATCCAACATGCGCAAACATCTTCCTTCGTTTGCATCAGCTTCGTCGTGGTTCGAGGTGTACGCTACGTTCTCCACATTCACCATGCTCCTCAGAACTGCATTCAATGATCTCATACCCCACCAAATTCGATCCTTTCTTGTCTCAAAGCTAGAAGCCTTTTTCCATAGCCAACCAAATAATCAAATATCTCTCCGAATCAACGAATTCTGGCACGATCGGTATAATGGAAATGAAGTTTTCCTTGCAGCGCAGGAGTATCTCCCCACCAGGATTACCAGCACCTACAAATCACTCAAAGTTGGTAAACGAGAAAACGAAAAGCACCTGAATCTCGCAGTGGATCCAAGCCAAGAGGTGGTGGACGAGTTTGAAGGCACCAAGTTCACTTGGAAGTTGGATGAGAATTCAGACGAAAACTCGCGCGATTCCTGGAAGCAAGCCTTTGTACTGACCTTCGACGAGAGGAACAGAGAGAGAGTGTTGGATCGGTATATCCCACACGTCCTTAAAACATACGAGGCCATGAAAAGTGAGAAGAGGATTCTGGAAATACATTCCAGGAGGAGTTACGGATGGACCGACTGGGAGTTATCTCATCCTGCCACATTCGACACGCTGGCCTTGGATCCCGAGTTGAAGCAAGCTGTAGTTGATGATGTAGATCGGTTCCTGAAGAGGAAGGAATTCTACAAGAAGGTGGGAAAGCCTTGGAAACGTGGGTACTTGCTGTATGGACCTCCGGGAACAGGAAAATCTAGCCTCATTGCAGCCATTGCCAATCACTTGAAATTCGACGTGTATGATTTGGATTTATCTTGTATTGCTTCTGATTCAGACCTGATGGAAGCCATGAGGGATATATCTGGCAGTTCCATCTTGGTGATTGAAGACATAGATTGCAACAAAGAGGTGCATGATCGATCAAAACCAAAACAAGATTCAGATATTGAGAAGGAGCGGGGTGAGGGTAGTGGGAAGTTTAGTCTGTCGAATTTGCTGAATTTCATCGATGGTTTAAGTTCAGGCGGTGGAGAGGGGTGGGTTATAATATTCACTACTAACCACAAAGAGAAAATAGACCCGGCGTTGCTGCGCCCTGGTCGCATGGACATGCACATTCACTTGTCCTTTCTCAGAGGTAGGGCGTTTCCGATTATGGCTTCTAATTATTTGGGTATTGAAGGACATCATCCTCTGGTTGAAGAGATCAAAGGAATGTTGGAGAAAACACAAGTCACCCCTGCAGTTGTAGGAGAGCATCTCATC 1272 0.4583 MVSNMRKHLPSFASASSWFEVYATFSTFTMLLRTAFNDLIPHQIRSFLVSKLEAFFHSQPNNQISLRINEFWHDRYNGNEVFLAAQEYLPTRITSTYKSLKVGKRENEKHLNLAVDPSQEVVDEFEGTKFTWKLDENSDENSRDSWKQAFVLTFDERNRERVLDRYIPHVLKTYEAMKSEKRILEIHSRRSYGWTDWELSHPATFDTLALDPELKQAVVDDVDRFLKRKEFYKKVGKPWKRGYLLYGPPGTGKSSLIAAIANHLKFDVYDLDLSCIASDSDLMEAMRDISGSSILVIEDIDCNKEVHDRSKPKQDSDIEKERGEGSGKFSLSNLLNFIDGLSSGGGEGWVIIFTTNHKEKIDPALLRPGRMDMHIHLSFLRGRAFPIMASNYLGIEGHHPLVEEIKGMLEKTQVTPAVVGEHLI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2672g00001 424 CDD RecA-like_BCS1 218 377 - -
Vium2672g00001 424 Gene3D - 196 375 IPR027417 -
Vium2672g00001 424 Pfam ATPase family associated with various cellular activities (AAA) 244 377 IPR003959 GO:0005524|GO:0016887
Vium2672g00001 424 SMART AAA_5 239 381 IPR003593 GO:0016887
Vium2672g00001 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 405 IPR027417 -
Vium2672g00001 424 Gene3D - 376 424 - -
Vium2672g00001 424 PANTHER BCS1 AAA-TYPE ATPASE 23 424 - -
Vium2672g00001 424 Pfam Domain associated at C-terminal with AAA 40 134 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2672g00001 Vium-Chr2672 6 1328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2672g00001 241 377 Calmodulin-binding Proteins AT3G56690 32.414 1.93e-13 70.5