Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2671g00043 ATGCAGTCGGAGGATGACATGCACGACGCCAACGACATCGATTCCCTCGACGACGATTTCTACAGCGGCGAAACCGAGGATGCGCCCTTGGACTACTACAGCGATTACGACGATGAGGCCGATGATTACTTCGAAGAAGCTGACAGGATTGAGTCTCGTCGCCCTGAGCAAAATTTTACCATTTTGAAGGAATCCGACATCAAACAAAGACAGGAAGAAGATGTCACTAGAGTAGCAACTGTTCTTTCCATATCAAGAATTTTTGCAAGCATACTACTTCGTTACTACAATTGGAGTGTCAGTAGAGTGCATGATGCATGGTTTGCTGATGAAGAACAAGTCAGAAAATCAGTTGGTTTGTTGGAGAAGCCAATTGTCCAGTATGATAATAATACTAGAGAGCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGGGCTAGAATTGAAATGGCTTCCTGTGGTCATCCCTACTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAGTGATGGTCCCGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTCGGTCAAGATATGATTAGTCTTCTAAAATCTGATGAAGATAAGCAGAAATATGCACGTTATCTTCTTAGGTCATACATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGGTGTGAATGTGCTGTCACTTTTGATGCTGGTAGTGTTGGGAATTACGATGTCTCTTGCCTCTGTTCATATAGTTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTAGACTGTGGGACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAATCTGAAAACATGAATTGGATACTTGCTAATTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACTTGCACACCGCCCTGTAAATATGAGTTTTGCTGGCTATGCCTTGGTGTATGGTCAGACCACGGTGAAAGAACTGGGGGTTTTTATGCTTGCAATCGCTATGAAACAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCACTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTGCAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTTATTACGGAGGCCTGGCTACAAATAATTGAATGTAGAAGAGTACTGAAATGGACATACGCATACGGGTTCTACTTACCCGAGCATGAGCTTGCGAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGCCTGGAGAGACTTCATCAATGTGCAGAAAAGGAACTTCAGCCATTCCTATGTGCTGATGAGCCATCTAGAGAATTCAATGACTTTCGTACTAAACTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTGGTAAGGGCGTTAGAGAATGGTTTATCTGACGTGGATAGTAATGGAGCTTCCTTCAGCAGAGCAACGAGTTCAAAAAATGCTGCTGGTAGCAGTAAAGGGAGATCCGGAAGAGTAAAGGGAACTTTTCGAACCAGCATGTCCAGCAGAATGAATGATGATAGTCATTGGTGTTGCGAGCATTGTACCTATGCAAATGTCAAATCTGCCACAACATGCCAGATGTGCTATCAACAGCGTAGATGA 1770 0.4328 MQSEDDMHDANDIDSLDDDFYSGETEDAPLDYYSDYDDEADDYFEEADRIESRRPEQNFTILKESDIKQRQEEDVTRVATVLSISRIFASILLRYYNWSVSRVHDAWFADEEQVRKSVGLLEKPIVQYDNNTRELTCGICFENYPRARIEMASCGHPYCISCWEGYISTSISDGPGCLMLRCPDPTCGAAVGQDMISLLKSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCECAVTFDAGSVGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHELAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCADEPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGASFSRATSSKNAAGSSKGRSGRVKGTFRTSMSSRMNDDSHWCCEHCTYANVKSATTCQMCYQQRR 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2671g00043 589 Pfam Ariadne domain 356 517 IPR045840 -
Vium2671g00043 589 MobiDBLite consensus disorder prediction 529 556 - -
Vium2671g00043 589 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Vium2671g00043 589 MobiDBLite consensus disorder prediction 10 34 - -
Vium2671g00043 589 Gene3D - 265 520 - -
Vium2671g00043 589 Coils Coil 33 53 - -
Vium2671g00043 589 ProSiteProfiles TRIAD supradomain profile. 133 347 IPR044066 -
Vium2671g00043 589 CDD Rcat_RBR_ARI7-like 292 346 - -
Vium2671g00043 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 435 IPR031127 GO:0004842|GO:0016567
Vium2671g00043 589 MobiDBLite consensus disorder prediction 1 34 - -
Vium2671g00043 589 SUPERFAMILY RING/U-box 132 218 - -
Vium2671g00043 589 CDD BRcat_RBR_ANKIB1 213 278 - -
Vium2671g00043 589 FunFam RBR-type E3 ubiquitin transferase 270 520 - -
Vium2671g00043 589 SUPERFAMILY RING/U-box 207 276 - -
Vium2671g00043 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 220 IPR013083 -
Vium2671g00043 589 Pfam IBR domain, a half RING-finger domain 286 333 IPR002867 GO:0008270
Vium2671g00043 589 Pfam IBR domain, a half RING-finger domain 206 269 IPR002867 GO:0008270
Vium2671g00043 589 SUPERFAMILY RING/U-box 288 336 - -
Vium2671g00043 589 FunFam RBR-type E3 ubiquitin transferase 131 220 - -
Vium2671g00043 589 SMART ibrneu5 273 343 IPR002867 GO:0008270
Vium2671g00043 589 SMART ibrneu5 206 269 IPR002867 GO:0008270
Vium2671g00043 589 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2671g00043 Vium-Chr2671 182826 190550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2671g00043 17 588 ARIADNE family AT1G65430 68.954 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2671g00043 K11968 - gmx:100784195 1117.06