Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2671g00036 ATGGTATTTGATGTAATTAGCTCAAATGGTCTGTATACTGATTCTGGCTCTGCCAACCTTCGCCGTTCAACAAGGAAGAGAAGGATTAATGTAAATCTTGAAGATTTTACAGATAGCTCTGGAGCTGAAGACGAAGACTTAATGAGACCTGCATATCCCTCATTGAGAAATCAGATTAAAAATAGAGTCAAACGGGATGGTTTGATGTCTTCTAAGCGCAAAAGAGCAGACGATACTAAGCCAGCACCTCGACGTGAAGGCTTACGTCCTCGTCGTTCAAAGGGTGCTGTGATAGAACGATTGATTTCAGAGTCAGATGATGAGCAAGACCTGTCAGAGGAAAAGGTTGATCAAGATGAAACAGAAAATGGAAATGATGCTGAGGAAAATGATGCAGATGATGGCCAAAATGAGATTGAGGGGGACGCTGAGGGTGAAGATGAAGGTGAGGATGAAGGTGATGAAGATGGCGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAAGCGCTATGATCTTCGGAATCGTTCAGATGTTCGGAGGTTCTCTATGGAGGAAAGAAAGGCTCGGCCTAGGTCTCCTCGAAGAGTGTTACATCAAGGTATGGGTACCAAGGTCAGCAGGGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCGAGGCCTGAAGATTCTGATGACTCACTTCTTGTGGATGAGCTGGACCAAGGCCCAGCTATTTCATGGGGGCGAGGTGGTAACAGATCTGGTCCACCTTGGCTTTTTGGAGGCTTAGACATGCATGGAACAACAGCTTTTGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTTTGGCTACTCTTACATCTGGGATTCAAACTGCTGGACCAAGCTCCAAGGGTGGAGCAGATATCCAACCCTTACAGGTTGACGATAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTACTATATCCGGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGAGTGTTGTTGTGTGGGCCCCCTGGCACAGGGAAAACATTGATTGCAAGGGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAAAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAGATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAGGAACAAATTCACAATTCAATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGCGGGCAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTACGACGCCCTGGTAGATTTGATCGAGAGTTTAACTTTCCCTTACCTGGTTGTGAGGCACGTGCTGAGATATTAGACATTCATACTCGTAAGTGGAAACATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCCAGTTGTGTAGGTTACTGTGGTGCTGATCTGAAAGCTCTTTGTACTGAAGCTGCCATCCATGCATTTCGGCAAAAGTATCCACAAGTTTATACAAGTGATGACAAATTTGTTATAGATGTTGATTCTGTCAATGTAGAAAAGACTCATTTTATTGAAGCAATGTCTACTATTACTCCTGCTGCTCATAGAGGAGCCATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTCCAGCGACATTTAGAGAAAGCCATGAGTGTTATATCTGATATTTTCCCCGCAGCTTCTATTGCATCTGAGTTGACTAAACTTTCAATGCTGTCCTACGGGTCTGCAATTCCACTTGTGTATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAGTTTCCTGTGCATTCATTAGGACTCCCATCTCTTCTGTCAGATCCCAGTGCAAAGACACCAGAAGAGGCATTAGTACATATATTTAGTGAAGCTAGAAGAACAACACCATCAATTCTTTATTTACCACAGTTTGATGTTTGGTGGGAAACTTCTCATGAGCAGCTCAGGGCTGTTCTCCTGACTTTGCTGGAAGAATTACCATCTGACCTGCCTATCTTACTGCTTGGTACATCCTCTGTTGAACCTGCTGAAGTTGAGGAAGTGCCTACTTCAGTTTTCCCTCATCGCACAATTTATCAAGTGAATATGCCAGGTGCCAAAGATAGGACTTTGTTTTTCAATCTTTTAATAGAAGCTGTTATGTCAATATTGTTGGAGGGAATCAACAAGAAGTCACAAGATACGGGATACCTCCCTGAACTTCCTAAGGCACCAAAATTGGCTACTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGCAGGTTACGAATGTGCCTTAGAGATATTTGCAACCGGATACTGTATGACAAAAGATTTAATGCCTTCCATTATCCAGTGTCAGACGAAGATGCACCAAATTACCGGTCAATTATACAGAACCCAATAGACATGGCTACCATCCTGCAGCATGTTGATAATGGCCAATATATTACATGTACTGCATTCATGCAGGATATCAATCTTATTGTATCCAATGCAAAGGCCTACAATGGAGAGGATTACAACGGTGCTAGGATTGTCAGTAGAGCTTGTGAGCTGCGTGATGCGGTGCATGGAATGCTCTCACAAATGGATCCAGCACTGGTTGCTTATTGTGACAAGATTGCTAGCCAAGGTGGCCCAGTTCAACTGTCTGATGAATTAGAGGATTCAACATTCCCTGCTTCTCCTGTTGTGCAGCTGGGTACTGGTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAACGTGGATCAGAGTTATGAGGCATTGAAGCGAGCTAAGAAGATCACCGAAGTGCATGCAGTTCAAATAGTGATTTTAAAGTTCATTCAAATTGGGTTGATAGCAGAAGACAAGTCGCAAGATTCTGTTCCGCCAAAGTCTTCCCGGGAGCATCAACCTAATGACACTAATGCTAAAGGGCTTGAACCTATGTCAATTGAAGAAAACTTGCATGGAACTTGTATACACAACCTTGCTGATTGCAACAGTCCCCAGGATGTCACAGTGCTAGATGGTGAATTTTTGAGAAAAGTGGAATCTGTCAAGCAGCTTTTTGTGAAGCGTAGTGAAAGTTTCAGCATTCCACAACTTGAAAGGCTTTACACAAGAATTATGAAGGGTGTGTTTGAAACAAAAAATAAAGGAGTGAATGGGGATCTTAAGGCTTCGGTTTTGAAGTTTTTGTTGAATTTTGTAGAGGATGATGCAAATTTCTAA 3462 0.4339 MVFDVISSNGLYTDSGSANLRRSTRKRRINVNLEDFTDSSGAEDEDLMRPAYPSLRNQIKNRVKRDGLMSSKRKRADDTKPAPRREGLRPRRSKGAVIERLISESDDEQDLSEEKVDQDETENGNDAEENDADDGQNEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRKRYDLRNRSDVRRFSMEERKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAISWGRGGNRSGPPWLFGGLDMHGTTAFGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIHAFRQKYPQVYTSDDKFVIDVDSVNVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSVISDIFPAASIASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFSEARRTTPSILYLPQFDVWWETSHEQLRAVLLTLLEELPSDLPILLLGTSSVEPAEVEEVPTSVFPHRTIYQVNMPGAKDRTLFFNLLIEAVMSILLEGINKKSQDTGYLPELPKAPKLATGPKVSELKAKVEAEQHALRRLRMCLRDICNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPIDMATILQHVDNGQYITCTAFMQDINLIVSNAKAYNGEDYNGARIVSRACELRDAVHGMLSQMDPALVAYCDKIASQGGPVQLSDELEDSTFPASPVVQLGTGTRMSARLRHVQPEVNVDQSYEALKRAKKITEVHAVQIVILKFIQIGLIAEDKSQDSVPPKSSREHQPNDTNAKGLEPMSIEENLHGTCIHNLADCNSPQDVTVLDGEFLRKVESVKQLFVKRSESFSIPQLERLYTRIMKGVFETKNKGVNGDLKASVLKFLLNFVEDDANF 1153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2671g00036 1153 ProSitePatterns AAA-protein family signature. 461 479 IPR003960 GO:0005524|GO:0016887
Vium2671g00036 1153 CDD Bromo_AAA 836 946 - -
Vium2671g00036 1153 MobiDBLite consensus disorder prediction 37 176 - -
Vium2671g00036 1153 MobiDBLite consensus disorder prediction 203 231 - -
Vium2671g00036 1153 Pfam AAA+ lid domain 518 555 IPR041569 -
Vium2671g00036 1153 Gene3D - 828 956 IPR036427 GO:0005515
Vium2671g00036 1153 Pfam Bromodomain 846 917 IPR001487 GO:0005515
Vium2671g00036 1153 Pfam ATPase family associated with various cellular activities (AAA) 356 491 IPR003959 GO:0005524|GO:0016887
Vium2671g00036 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 581 IPR027417 -
Vium2671g00036 1153 SMART AAA_5 352 493 IPR003593 GO:0016887
Vium2671g00036 1153 FunFam ATPase family, AAA domain-containing 2 314 497 - -
Vium2671g00036 1153 PRINTS Bromodomain signature 868 884 IPR001487 GO:0005515
Vium2671g00036 1153 PRINTS Bromodomain signature 884 902 IPR001487 GO:0005515
Vium2671g00036 1153 PRINTS Bromodomain signature 902 921 IPR001487 GO:0005515
Vium2671g00036 1153 ProSiteProfiles Bromodomain profile. 859 921 IPR001487 GO:0005515
Vium2671g00036 1153 PANTHER AAA DOMAIN-CONTAINING 15 953 IPR045199 -
Vium2671g00036 1153 Gene3D - 492 577 - -
Vium2671g00036 1153 SMART bromo_6 836 943 IPR001487 GO:0005515
Vium2671g00036 1153 FunFam ATPase family AAA domain-containing protein 2B 492 577 - -
Vium2671g00036 1153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 640 854 IPR027417 -
Vium2671g00036 1153 Gene3D - 625 758 IPR027417 -
Vium2671g00036 1153 MobiDBLite consensus disorder prediction 59 105 - -
Vium2671g00036 1153 SUPERFAMILY Bromodomain 834 948 IPR036427 GO:0005515
Vium2671g00036 1153 MobiDBLite consensus disorder prediction 106 163 - -
Vium2671g00036 1153 Gene3D - 314 584 IPR027417 -
Vium2671g00036 1153 MobiDBLite consensus disorder prediction 1034 1055 - -
Vium2671g00036 1153 FunFam ATPase family AAA domain-containing protein 828 956 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2671g00036 Vium-Chr2671 131825 137751 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2671g00036 302 556 Calmodulin-binding Proteins AT3G56690 36.680 6.49e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2671g00036 K22531 - gmx:100787765 1966.81