Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2671g00035 ATGTATCCAAAACGGTCAGGCCAAGATGGCCCTGATTTGAGACAAGTGCGCTCAAGTGACAGGATCAAGACAAGGCCAAACATTTATGGCCGACCATACTTGTTTTATAACCAAAATCTTAGGCGCACAAGGAAAAACAAGAACAAGACAAGGACTGCAGCTTCTCAGATTGCCAAAATGTTGCGTCCAGGGAATCGGAAACCACAAGATTCTAATGCTAATTCTGGCTCTGCCAACCTTCGCCGTTCAACAAGGAAGAGAAGGATTAATGTAAATCTTGAAGATTTTACAGATAGCTCTGGAGCTGAAGACGAAGACTTAATGAGACCTGCATATCCCTCATTGAGAAACCAGATTAAAAATAGAGTCAAACGGGATGGTTTGATGTCTTCTAAGCGCAAAAGAGCAGACGATACTAAGCCAGCACCTCGACGTGAAGGCTTACGTCCTCGTCGTTCAAAGGGTGCTGTGATAGAACGATTGATTTCAGAGTCAGATGATGAGCAAGACCTGTCAGAGGAAAAGGTTGATCAAGATGAAACAGAAAATGGAAATGATGCTGAGGAAAATGATGCAGATGATGGCCAAAATGAGATTGAGGGGGACGCTGAGGGTGAAGATGAAGGTGAGGATGAAGGTGATGAAGATGGCGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAAGCGCTATGATCTTCGGAATCGTTCAGATGTTCGGAGGTTCTCTATGGAGGAAAGAAAGGCTCGGCCTAGGTCTCCTCGAAGAGTGTTACATCAAGGTATGGGTACCAAGGTCAGCAGGGATGTAAGGAAAGGTGGATCACGAGTTCATAAGCGTCATCGTTTAGCGAGGCCTGAAGATTCTGATGACTCACTTCTTGTGGATGAGCTGGACCAAGGCCCAGCTATTTCATGGGGGCGAGGTGGTAACAGATCTGGTCCACCTTGGCTTTTTGGAGGCTTAGACATGCATGGAACAACAGCTTTTGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTTTGGCTACTCTTACATCTGGGATTCAAACTGCTGGACCAAGCTCCAAGGGTGGAGCAGATATCCAACCCTTACAGGTTGACGATAGTGTTAGTTTTGATGATATAGGTGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTACTATATCCGGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGAGTGTTGTTGTGTGGGCCCCCTGGCACAGGGAAAACATTGATTGCAAGGGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAAAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAGATAGATGGACTTGCACCTGTGAGGTCTAGCAAGCAGGAACAAATTCACAATTCAATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGCGGGCAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTACGACGCCCTGGTAGATTTGATCGAGAGTTTAACTTTCCCTTACCTGGTTGTGAGGCACGTGCTGAGATATTAGACATTCATACTCGTAAGTGGAAACATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCCAGTTGTGTAGGTTACTGTGGTGCTGATCTGAAAGCTCTTTGTACTGAAGCTGCCATCCATGCATTTCGGCAAAAGTATCCACAAGTTTATACAAGTGATGACAAATTTGTTATAGATGTTGATTCTGTCAATGTAGAAAAGACTCATTTTATTGAAGCAATGTCTACTATTACTCCTGCTGCTCATAGAGGAGCCATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTCCAGCGACATTTAGAGAAAGCCATGAGTGTTATATCTGATATTTTCCCCGCAGCTTCTATTGCATCTGAGTTGACTAAACTTTCAATGCTGTCCTACGGGTCTGCAATTCCACTTGTGTATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATCATCTTGGCCCTGCGGTTTTACATGAGCTGGAAAAGTTTCCTGTGCATTCATTAGGACTCCCATCTCTTCTGTCAGATCCCAGTGCAAAGACACCAGAAGAGGCATTAGTACATATATTTAGTGAAGCTAGAAGAACAACACCATCAATTCTTTATTTACCACAGTTTGATGTTTGGTGGGAAACTTCTCATGAGCAGCTCAGGGCTGTTCTCCTGACTTTGCTGGAAGAATTACCATCTGACCTGCCTATCTTACTGCTTGGTACATCCTCTGTTGAACCTGCTGAAGTTGAGGAAGTGCCTACTTCAGTTTTCCCTCATCGCACAATTTATCAAGTGAATATGCCAGGTGCCAAAGATAGGACTTTGTTTTTCAATCTTTTAATAGAAGCTGTTATGTCAATATTGTTGGAGGGAATCAACAAGAAGTCACAAGATACGGGATACCTCCCTGAACTTCCTAAGGCACCAAAATTGGCTACTGGTCCAAAAGTATCTGAGCTAAAAGCAAAGGTGGAAGCTGAGCAACATGCACTTCGCAGGTTACGAATGTGCCTTAGAGATATTTGCAACCGGATACTGTATGACAAAAGATTTAATGCCTTCCATTATCCAGTGTCAGACGAAGATGCACCAAATTACCGGTCAATTATACAGAACCCAATAGACATGGCTACCATCCTGCAGCATGTTGATAATGGCCAATATATTACATGTACTGCATTCATGCAGGATATCAATCTTATTGTATCCAATGCAAAGGNTGTGTGTCATTCTGTTTTGTTGATTCACAGTCCTCTTGTGTGA 2958 0.4375 MYPKRSGQDGPDLRQVRSSDRIKTRPNIYGRPYLFYNQNLRRTRKNKNKTRTAASQIAKMLRPGNRKPQDSNANSGSANLRRSTRKRRINVNLEDFTDSSGAEDEDLMRPAYPSLRNQIKNRVKRDGLMSSKRKRADDTKPAPRREGLRPRRSKGAVIERLISESDDEQDLSEEKVDQDETENGNDAEENDADDGQNEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRKRYDLRNRSDVRRFSMEERKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAISWGRGGNRSGPPWLFGGLDMHGTTAFGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIHAFRQKYPQVYTSDDKFVIDVDSVNVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSVISDIFPAASIASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFSEARRTTPSILYLPQFDVWWETSHEQLRAVLLTLLEELPSDLPILLLGTSSVEPAEVEEVPTSVFPHRTIYQVNMPGAKDRTLFFNLLIEAVMSILLEGINKKSQDTGYLPELPKAPKLATGPKVSELKAKVEAEQHALRRLRMCLRDICNRILYDKRFNAFHYPVSDEDAPNYRSIIQNPIDMATILQHVDNGQYITCTAFMQDINLIVSNAKXVCHSVLLIHSPLV 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2671g00035 985 Gene3D - 888 976 IPR036427 GO:0005515
Vium2671g00035 985 ProSitePatterns AAA-protein family signature. 521 539 IPR003960 GO:0005524|GO:0016887
Vium2671g00035 985 Gene3D - 684 818 IPR027417 -
Vium2671g00035 985 ProSiteProfiles Bromodomain profile. 919 970 IPR001487 GO:0005515
Vium2671g00035 985 Pfam Bromodomain 906 972 IPR001487 GO:0005515
Vium2671g00035 985 Gene3D - 552 637 - -
Vium2671g00035 985 SMART bromo_6 896 983 IPR001487 GO:0005515
Vium2671g00035 985 MobiDBLite consensus disorder prediction 44 236 - -
Vium2671g00035 985 Pfam ATPase family associated with various cellular activities (AAA) 416 551 IPR003959 GO:0005524|GO:0016887
Vium2671g00035 985 FunFam ATPase family AAA domain-containing protein 2B 552 637 - -
Vium2671g00035 985 MobiDBLite consensus disorder prediction 166 223 - -
Vium2671g00035 985 FunFam ATPase family, AAA domain-containing 2 374 557 - -
Vium2671g00035 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 700 915 IPR027417 -
Vium2671g00035 985 Pfam AAA+ lid domain 578 615 IPR041569 -
Vium2671g00035 985 SUPERFAMILY Bromodomain 894 971 IPR036427 GO:0005515
Vium2671g00035 985 PANTHER AAA DOMAIN-CONTAINING 43 972 IPR045199 -
Vium2671g00035 985 MobiDBLite consensus disorder prediction 119 165 - -
Vium2671g00035 985 SMART AAA_5 412 553 IPR003593 GO:0016887
Vium2671g00035 985 MobiDBLite consensus disorder prediction 1 25 - -
Vium2671g00035 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 641 IPR027417 -
Vium2671g00035 985 Gene3D - 374 644 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2671g00035 Vium-Chr2671 121921 131756 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2671g00035 362 616 Calmodulin-binding Proteins AT3G56690 36.680 4.40e-42 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2671g00035 K22531 - gmx:100787765 1726.06