Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2671g00024 ATGGGGCACAGTTCGAAGAAGAAGAAGCGCGGAGGCGGGAGCGGTCGCCGGAGCAAGGGGAGAACGCAGTCCAAAGATCACGCTTCTCAATTTGGCGCCGACGATTACGACCAGCTCTCCGAAGAGATAACCGCAGTATGCGCTATTTTCCAAGAAGACTGCAAAGTTCTTCCAGGCTCGCCTCCTCGTATAGTTATTAAGCTCAGGCCTTACTCAAAGGACATGGGTTATGAAGATCTAGATGTTTCTGCTGCTCTTGTTGTCAGGTGCTTGCCTGGGTATCCTTTCAAGTGTCCCAAGCTGCAGATTACACAGGAGAAAGGGTTATCAGAAGCTGATACTGATAAGCTTTTATCTCTCCTCCATGATCAGGCTACTTTAAATGCTAGGGAGGGACGAGTAATGATCTATAATCTGGTTGAGGCTGCTCAGGAATTTCTTTCTGGTATTGAGCCAATTGGCATATCAAATGATTCTAAGCTTCTACATTCAACTGTGGAAAGCAATGAAGAAATGTTTACCAAGGATAAGACATCTTTAAGTAAGAAGGGTTCCTTTGTTTATGGTTTCATAGACCTTTTCAGTGGCTATGGAGAAACGTGGAGTTGGGGTTTTGGAATGGATGAAACTGCCAGGAAAAGTTCTTCTCTTCCCTTGTCTAATTTAGATGGCTCAAAACAACGCTTTGAGGCTCATGAGAAGAAATTTAGTAGTAAGGAAATGCCGTTAGTTATGCAAGAACATCCTGCCGAATTAGGTACTGTCGAAGAAGTTATTGAAGATAGCAAAAGTAGTTTATCTTTGACTAGTTCAAGTACATCATCAGAGGAGGATTTTGTAGGAAACGATAATGAAGGTGAGAAAGAGTATTTTATTGTTGATAAGTATACAACTGAAGATAATGACGGTATTAATGAAAGTGAGTCTCCAAAGGCTCTGCCTTCTGACTTCTTGCCTCATCATCAACCATCTCAAACAATTGAAAAGGATATACTAATGGTTCACATGCTTCGCCTTGTTTGTGCTTCTAATGGATCATTGGCTGACTGTTTGCCACAAGTGGTAACAGAGCTGTATAATATAGGGATCATTTCTGATTCAGCACGTGATATGGCATCTAAATCACCATCCATTTTTAACAAAACATTTGATCGTGTTTTCCACAAACACCTGGCTTCATCGAGAATATCTCAATTTTGGAACCCTGATCTTGGAGGCTCGAACACAATTTCCCATACTTCACGATATTTGAATGACTTTGAGGAGCTGCGTCCTCTAGGTCATGGTGGTTTTGGTCATGTTGTGCTGTGCAAAAATAAACTTGACGGAAGGCAATATGCAGTAAAGAGAATTCGCCTTAAGGACAAAAGCATGCCTGACCGAATACTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAACATGTCGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTTCTGATTCTTCTGGTGATTCTGGTTGGGGTTCAAAGACTACACTAAGCTCTACTTTCAGCTTTACCGCTGCAACTTCCAATGATGTCTTTGGGCATGAGAAACAGCTTGAATCAACTTACCTTTATATACAAATGGAATACTGTCCCAGGACTCTTCGCCAGAAATTTGAATCATACGATCATTTTGACAAAGAACTGGCTTGGCATTTCTTTCGTCAAATAGTGGAAGGCTTGGCACACATACATGCACAAGGAATAATTCATCGGGATTTAACACCAAATAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTAAAGTTAGAGCAGCTGGATCAAGATGTGGGCCACACTGCTGATGCAACTGGAGTTTCCATTGATGGCACTGGACAAGTGGGGACATATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCAATGGAGAGACACGTTGTTTTATCTGATTTGAAACAGAAAGGGGAAGTTCCACCAATTTGGATTGCTGAATTTCCAGAACAGGAATCCTTACTGAGGCAGTTAATGTCTCCAGCTCCTTCAGATCGCCCTTCTGCCACAGAACTTCTGCAAAATGCATTTCCTCAGCGAATGGAGTCTGAATTATTGGATGATATCCTTAGAACAATGCAGAAATCAGAGGATACAAGCATATATGATAAAATTTTAAATGCTATCTTTGACGAAGAGATGCTAAGCACAAAACACGTTCGTCAGGTTGGTAGATTGGGATCAGTTGGAGATAGCAGTTCATCCATTCAGTACACAGAATTTGAAACAGAGGTTCGGGATTATGTTGTAGATATGAGCAGGGAAATTTTTAGACAGCATTGTGCAAAGCACCTTGAAATATCAACAATGAGATTATTGGAAGATTGTCCACAGTTTAATAGAAATGCAGTTAAACTTCTGACGTATGGAGGAGACATGCTTGAACTTTGCCACGAGTTGCGTTATCCGTTTGTGAACTGGATTATATCTAACCAGAAATCTTCATTTAAACGGTATGAGATATCATATGTCTTTAGAAGAGCAGTTGGACATTCATCGCCAAATCGCTACCTTCAGGGGGATTTTGACATTATTGGTGGCACTTCGGCATTGACAGAAGCAGAGGTCATAAAGGTCACAAGGGACGTAGTCACTTGTTTTTTTCATGCAGATTCATGTGACATTCATCTCAACCATGCTGACCTTCTGGATGCAATTTGGTCATGGACTGGAGTCAAGGTAGAACACAGACTCAAAGTAGCAGAGCTTCTCTCCTTGATGGGTTCTTTACGCCCACAATCCTCAGAAAGGAAATCAAAATGGGTCGTGATAAGGCGGCAGCTTTTGCAGGAACTGAATTTAGCAGAGGCTAAGGTAAATAGGTTACAGACTGTAGGTTTAAGATTTTGTGGATCTGCAGATCATGCACTCCCCCGTTTAAGAGGAGCTCTTCCATCTGTAAACTGTTGCAGATAA 3054 0.4149 MGHSSKKKKRGGGSGRRSKGRTQSKDHASQFGADDYDQLSEEITAVCAIFQEDCKVLPGSPPRIVIKLRPYSKDMGYEDLDVSAALVVRCLPGYPFKCPKLQITQEKGLSEADTDKLLSLLHDQATLNAREGRVMIYNLVEAAQEFLSGIEPIGISNDSKLLHSTVESNEEMFTKDKTSLSKKGSFVYGFIDLFSGYGETWSWGFGMDETARKSSSLPLSNLDGSKQRFEAHEKKFSSKEMPLVMQEHPAELGTVEEVIEDSKSSLSLTSSSTSSEEDFVGNDNEGEKEYFIVDKYTTEDNDGINESESPKALPSDFLPHHQPSQTIEKDILMVHMLRLVCASNGSLADCLPQVVTELYNIGIISDSARDMASKSPSIFNKTFDRVFHKHLASSRISQFWNPDLGGSNTISHTSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKRIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVSDSSGDSGWGSKTTLSSTFSFTAATSNDVFGHEKQLESTYLYIQMEYCPRTLRQKFESYDHFDKELAWHFFRQIVEGLAHIHAQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDVGHTADATGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKGEVPPIWIAEFPEQESLLRQLMSPAPSDRPSATELLQNAFPQRMESELLDDILRTMQKSEDTSIYDKILNAIFDEEMLSTKHVRQVGRLGSVGDSSSSIQYTEFETEVRDYVVDMSREIFRQHCAKHLEISTMRLLEDCPQFNRNAVKLLTYGGDMLELCHELRYPFVNWIISNQKSSFKRYEISYVFRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDVVTCFFHADSCDIHLNHADLLDAIWSWTGVKVEHRLKVAELLSLMGSLRPQSSERKSKWVVIRRQLLQELNLAEAKVNRLQTVGLRFCGSADHALPRLRGALPSVNCCR 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2671g00024 1017 FunFam eIF-2-alpha kinase GCN2 408 536 - -
Vium2671g00024 1017 Coils Coil 971 991 - -
Vium2671g00024 1017 SUPERFAMILY Class II aaRS and biotin synthetases 784 959 IPR045864 -
Vium2671g00024 1017 SUPERFAMILY Protein kinase-like (PK-like) 416 746 IPR011009 -
Vium2671g00024 1017 MobiDBLite consensus disorder prediction 1 33 - -
Vium2671g00024 1017 SMART RWD2001b 41 150 IPR006575 GO:0005515
Vium2671g00024 1017 ProSitePatterns Tyrosine protein kinases specific active-site signature. 575 587 IPR008266 GO:0004672|GO:0006468
Vium2671g00024 1017 FunFam eIF-2-alpha kinase GCN2 30 154 - -
Vium2671g00024 1017 FunFam eIF-2-alpha kinase GCN2 540 733 - -
Vium2671g00024 1017 MobiDBLite consensus disorder prediction 1 16 - -
Vium2671g00024 1017 Gene3D Ubiquitin Conjugating Enzyme 29 153 IPR016135 -
Vium2671g00024 1017 Gene3D Phosphorylase Kinase; domain 1 408 536 - -
Vium2671g00024 1017 Gene3D Bira Bifunctional Protein; Domain 2 782 1010 IPR045864 -
Vium2671g00024 1017 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 81 764 - -
Vium2671g00024 1017 ProSiteProfiles RWD domain profile. 41 150 IPR006575 GO:0005515
Vium2671g00024 1017 Pfam Protein kinase domain 420 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2671g00024 1017 ProSiteProfiles Protein kinase domain profile. 420 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2671g00024 1017 Pfam RWD domain 38 147 IPR006575 GO:0005515
Vium2671g00024 1017 Gene3D Transferase(Phosphotransferase) domain 1 539 733 - -
Vium2671g00024 1017 MobiDBLite consensus disorder prediction 301 320 - -
Vium2671g00024 1017 CDD STKc_EIF2AK4_GCN2_rpt2 414 720 - -
Vium2671g00024 1017 ProSitePatterns Protein kinases ATP-binding region signature. 426 449 IPR017441 GO:0005524
Vium2671g00024 1017 SUPERFAMILY UBC-like 36 147 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2671g00024 Vium-Chr2671 80807 96018 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2671g00024 409 723 MAP Kinase Kinase Kinase AT1G63700 26.316 5.21e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Vium2671g00024 Pkinase 3.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2671g00024 K16196 - gmx:100797996 1727.99