Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2671g00021 ATGTTTTGGTTTCTTTGTATTATGGGGATCTCGCTAAAGCGTCAGTTGTTGAACGGGAATCCATGTTCATTTAGGCTTCTGTTTGAGCTGGTGGTTTTATCGTACTTGTGGTTACAAGTAACAAGCCTTGGTTCCATGTCATCCATTGCCATCTCTTACGGCGAAAAGGGTTCTGTGTTTTGTGGTTTGAAATCTGATGGCTCTCACACAGTGACATGTTATGGAGGCAATTCAGCCATAATCTATGGAACACCAGCCCAGTTTTCATTTGTTGGTCTAACAGCTGGAGACGGCTTTGTATGTGGGCTTCTGATGGGTTCGAATCAACCGTACTGCTGGGGTAGCAGTGCCTACATTGAAATGGGAGTGCCACAACCTATTATCGGAGGAGCACAGTACCTAGAAATCAGTGCTGGTGATTACCATGTTTGTGGCTTGAGGAAACCTTTGACTGGAAAACACAGGTACATTTCCTTGGTTGATTGCTGGGGCTACAACATGACCAAAAACTATGTGTTTGGGGGACAGATTGAATCAATCACAGCTGGTTCCGAATTCAATTGTGGTCTTTTTTCTCAGAACAGGACTGTGTTCTGCTGGGGTGATGAGACTAATAGCCTGGTGATTAGTTTGATTCCACAAGACAAGAGATTCCAGAAAATTTCAGCCGGTGGGTATCATGTGTGTGGAATCTTAGAGGGAGTGAATTCCAGGACTGTTTGTTGGGGGAGAAGCTTGAACCTTGGGGAAGAAATTTCTGTGGCACATGCAGGTCAAGGAAACGTTGATTTGGCTCCAAATGATCCCATGCTTTCTGTAGTGGGAGGGAAGTTCCATGCATGTGGGATTAAGAGCTATGATCGTGGAGTGATTTGTTGGGGCTTTATCATCAAACGAAGCACTCCATCTCCTAGAGGGATTAAGGTTTTTGAAGTTGCAGCCGGTGATTACTTTACTTGTGCAGTTCTTGCTGACAAATATCTTATGCCTTCATGTTGGGGAGTTGATTTTCCCACCTCACTTCCTTTAGCTGTTTCACCAGGAATGTGTCAACCTGCTCCATGCCCTCCTGGTTCATATGCCATTAATCAGCGTAAAGGTCTCTGCAAATCACCAGATTCTCGTGTTTGCATGAGATGCAGCGGTGCTTGTCCTCCTGAAATGTATCAGAAGAGTGCATGCAATTTGGCTTCTGATAGACTGTGTGAATATAACTGTGCCTCTTGTTCTTCATCCCAATGCTTCACGAACTGCTCCTCTTCATACTCCAATGCTTCCACTGAGAAGAAAACTGAAAAATTCTGGGCTTTACAGTTGCCAGTTGTAATTGCCGAGATTGCTTTCGCGGTTTTCATAGTCAGTGTGGTGTCAATAACTGCAATTTTATACGTCCGCTACCGGCTAAGAGATTGTGAGTGTTCAAAAGGGTCAAAGGGGAAGAAACTCAACGGGAGTTCATCCCTGCAAAACGAGAATAAGGTGAGGCCAGACATTGAGGAGTTAAAGATCAGAAGGGCTCAAATGTTCACCTATGAGGAACTAGAAAGTGCAACTTGTGGATTCAAGGAAGAGTCCATAGTGGGGAAGGGGAGTTTCTCTTGTGTGTTCAAGGGAGTGCTGAAAGATGGGACAGTTGTTGCTGTAAAAAGGGCAATAGTGTCTCCCAACATGCAGAAGAATTCCAAGGAGTTTCACACTGAACTTGACTTGCTCTCAAGGTTGAACCACGCTCATTTGCTCAACCTACTAGGCTATTGTGAAGAAGGTGGAGAGAGACTTCTTGTGTACGAGTTCATGGCTCATGGCTCCTTGCACCAACACTTGCATGGGACAAACCAAGTGTTGAGAGAACAGTTAAATTGGATAAGAAGAGTGACTATTGCAGTGCAAGCAGCACGTGGAATTGAATATTTGCATGGCTATGCTTGCCCTCCTGTGATTCACAGAGACATAAAGTCCTCAAACATTCTGATTGATGAAGAACACAATGCAAGAGTGGCTGACTTTGGTTTATCATTGTTAGGTCCTGCAGATAGTGGTTCACCACTGGCTGAACTCCCAGCTGGGACTTTTGGCTATCTTGATCCTGAATACTACAGGCTTCATTACCTCACAACCAAATCAGATGTGTATAGTTTTGGTGTTCTTCTTTTGGAGATTCTGAGTGGTAGAAAAGCCATAGACATGCAATATGAAGAAGGGAACATAGTGGAATGGGCAGTGCCTCTTATAAAATCAGGAGATATAACTGAAATTTTGGACCCAGTTTTGAAACCCCCTCCTGATGTAGAAGCCCTGAAGAGAATATCCAATGTGGCTTGTAAGTGTGTGAGGATGAGAGGGAAAGAGAGACCCTCAATGGACAAAGTGACAACAGCTTTGGAGAGAGGTCTTGCACAGTTGATGGGTAGTCCATGCATTGAGCAGCCGATTTTGCCAACCGAGGTGGTTTTGGGAAGCAACAGATTGCACAAGAAATCATCTCAAATATCCTCAAACAGGTCAGTTTCTGAGACTGATGTGGTAGAACATGAGGAACAAAGGATTGAGTTCAGGGCACCCTCATGGATTACCTTCCCCAGTGTGACATCTTCTCAGAGGAGAAAGTCATCAGTGTCTGAGGTAGATGTTGATGGGAAGAATAATGCAGAAGGTAAGAACTTGAGCAATGTTGGAGGTGGTGGTGATGTTTTGAGAAGCCTTGATGAAGAGATTGGTCCTGCTTCTCCAGGAGAGAGGATGTTCTTGCAACACAACTTCTAA 2763 0.4441 MFWFLCIMGISLKRQLLNGNPCSFRLLFELVVLSYLWLQVTSLGSMSSIAISYGEKGSVFCGLKSDGSHTVTCYGGNSAIIYGTPAQFSFVGLTAGDGFVCGLLMGSNQPYCWGSSAYIEMGVPQPIIGGAQYLEISAGDYHVCGLRKPLTGKHRYISLVDCWGYNMTKNYVFGGQIESITAGSEFNCGLFSQNRTVFCWGDETNSLVISLIPQDKRFQKISAGGYHVCGILEGVNSRTVCWGRSLNLGEEISVAHAGQGNVDLAPNDPMLSVVGGKFHACGIKSYDRGVICWGFIIKRSTPSPRGIKVFEVAAGDYFTCAVLADKYLMPSCWGVDFPTSLPLAVSPGMCQPAPCPPGSYAINQRKGLCKSPDSRVCMRCSGACPPEMYQKSACNLASDRLCEYNCASCSSSQCFTNCSSSYSNASTEKKTEKFWALQLPVVIAEIAFAVFIVSVVSITAILYVRYRLRDCECSKGSKGKKLNGSSSLQNENKVRPDIEELKIRRAQMFTYEELESATCGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIVSPNMQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGTNQVLREQLNWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSGSPLAELPAGTFGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIKSGDITEILDPVLKPPPDVEALKRISNVACKCVRMRGKERPSMDKVTTALERGLAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQISSNRSVSETDVVEHEEQRIEFRAPSWITFPSVTSSQRRKSSVSEVDVDGKNNAEGKNLSNVGGGGDVLRSLDEEIGPASPGERMFLQHNF 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2671g00021 920 SUPERFAMILY RCC1/BLIP-II 38 295 IPR009091 -
Vium2671g00021 920 Gene3D Transferase(Phosphotransferase) domain 1 599 802 - -
Vium2671g00021 920 FunFam Receptor protein kinase CRINKLY4 599 801 - -
Vium2671g00021 920 Gene3D Phosphorylase Kinase; domain 1 491 598 - -
Vium2671g00021 920 Pfam Protein tyrosine and serine/threonine kinase 524 793 IPR001245 GO:0004672|GO:0006468
Vium2671g00021 920 Gene3D - 87 347 IPR009091 -
Vium2671g00021 920 MobiDBLite consensus disorder prediction 867 895 - -
Vium2671g00021 920 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 28 920 - -
Vium2671g00021 920 SUPERFAMILY Protein kinase-like (PK-like) 501 794 IPR011009 -
Vium2671g00021 920 FunFam serine/threonine-protein kinase-like protein CCR1 491 598 - -
Vium2671g00021 920 SMART serkin_6 521 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2671g00021 920 ProSiteProfiles Protein kinase domain profile. 521 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2671g00021 920 ProSitePatterns Protein kinases ATP-binding region signature. 527 549 IPR017441 GO:0005524
Vium2671g00021 920 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Vium2671g00021 920 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 354 402 IPR001368 GO:0005515
Vium2671g00021 920 FunFam Serine/threonine-protein kinase-like protein CR4 42 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2671g00021 Vium-Chr2671 70321 74215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2671g00021 26 920 Receptor kinase-like Gene Family AT3G59420 68.182 0.0 1248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vium2671g00021 PK_Tyr_Ser-Thr 6.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2671g00021 - - gmx:100797455 1706.42