Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium2671g00009 | ATGAAAATTCAGTGTGACGTGTGTGAGAAAGCCCCGGCAACAGTGATTTGTTGCGCAGATGAAGCAGTTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTTCTTCAATGCTTATCAAACAAGCTTCCCAGATGCGACATATGTCAGGATAAGGCAGCTTTCATATTCTGTGTTGAGGACAGAGCACTCTTGTGTAAAGACTGTGATGAGCCAATTCATGTAGCTGGTAGCCTTTCTGCGAACCACCAGCGGTTTCTTGCTACTGGTATTCGGGTGGCTTTGGGTTCTAATTGTACCAAAGGCAATGAAAAGGGTCACATGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAGTCACCAGACAAAGGTCAGAAGCAGTCTCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGCAGGTCTTTTTGGTGAACAGTTCCCTCAGGAACCTTTAGCAGCTGCTGAAGTTCCCCAGCTTCCAGTGACACATACCAGCAATGTTGCCTCACAGAAAGCTTCTAAGTCCTTCATGTCTTACAAAAAGCCTAGGATTGAAGTTCTAGATGAAGATGATGAGGAACATTTCACTGTTCCTGATTTAGGCTAG | 723 | 0.4509 | MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALGSNCTKGNEKGHMEPSNPNAQEVPVKVPSQQVPSFTSSWAVDDLLELTDFESPDKGQKQSLEFGELEWLADAGLFGEQFPQEPLAAAEVPQLPVTHTSNVASQKASKSFMSYKKPRIEVLDEDDEEHFTVPDLG | 240 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium2671g00009 | 240 | CDD | Bbox1_BBX-like | 5 | 47 | - | - | |
Vium2671g00009 | 240 | Pfam | B-box zinc finger | 52 | 95 | IPR000315 | GO:0008270 | |
Vium2671g00009 | 240 | Pfam | B-box zinc finger | 4 | 44 | IPR000315 | GO:0008270 | |
Vium2671g00009 | 240 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Vium2671g00009 | 240 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 239 | - | - | |
Vium2671g00009 | 240 | CDD | Bbox1_BBX-like | 57 | 98 | - | - | |
Vium2671g00009 | 240 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270 | |
Vium2671g00009 | 240 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Vium2671g00009 | 240 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270 | |
Vium2671g00009 | 240 | Gene3D | Classic Zinc Finger | 1 | 94 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium2671g00009 | Vium-Chr2671 | 40362 | 42795 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium2671g00009 | 1 | 161 | Orphan Transcription Factor Family | AT1G06040 | 69.048 | 8.50e-72 | 215 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | DBB | Vium2671g00009 | zf-B_box | 2.1e-07 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium2671g00009 | - | - | gmx:100779183 | 436.032 |