Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2671g00009 ATGAAAATTCAGTGTGACGTGTGTGAGAAAGCCCCGGCAACAGTGATTTGTTGCGCAGATGAAGCAGTTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTTCTTCAATGCTTATCAAACAAGCTTCCCAGATGCGACATATGTCAGGATAAGGCAGCTTTCATATTCTGTGTTGAGGACAGAGCACTCTTGTGTAAAGACTGTGATGAGCCAATTCATGTAGCTGGTAGCCTTTCTGCGAACCACCAGCGGTTTCTTGCTACTGGTATTCGGGTGGCTTTGGGTTCTAATTGTACCAAAGGCAATGAAAAGGGTCACATGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAGTCACCAGACAAAGGTCAGAAGCAGTCTCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGCAGGTCTTTTTGGTGAACAGTTCCCTCAGGAACCTTTAGCAGCTGCTGAAGTTCCCCAGCTTCCAGTGACACATACCAGCAATGTTGCCTCACAGAAAGCTTCTAAGTCCTTCATGTCTTACAAAAAGCCTAGGATTGAAGTTCTAGATGAAGATGATGAGGAACATTTCACTGTTCCTGATTTAGGCTAG 723 0.4509 MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALGSNCTKGNEKGHMEPSNPNAQEVPVKVPSQQVPSFTSSWAVDDLLELTDFESPDKGQKQSLEFGELEWLADAGLFGEQFPQEPLAAAEVPQLPVTHTSNVASQKASKSFMSYKKPRIEVLDEDDEEHFTVPDLG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2671g00009 240 CDD Bbox1_BBX-like 5 47 - -
Vium2671g00009 240 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Vium2671g00009 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Vium2671g00009 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vium2671g00009 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Vium2671g00009 240 CDD Bbox1_BBX-like 57 98 - -
Vium2671g00009 240 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vium2671g00009 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vium2671g00009 240 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vium2671g00009 240 Gene3D Classic Zinc Finger 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2671g00009 Vium-Chr2671 40362 42795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2671g00009 1 161 Orphan Transcription Factor Family AT1G06040 69.048 8.50e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vium2671g00009 zf-B_box 2.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2671g00009 - - gmx:100779183 436.032