Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2671g00006 ATGGAAAGAGACAAAGACAACAAATCCCCTCCTCTGCCACCTTCGTCTTCCTCATCCCAACCTTTCAGCCATGACATCGTCGGAATGCCCGATAATCCAATCAAAAACAGGGGCCATAGACGCGCCCATTCCGAGATTATCACCCTTCCCGATGACCTCACCTTCGACACTGATCTCCCCCTCGATGACGACTTCCTCGCCCTCGTGGATCATTTTAACTCCCCTCCGTTGCCTGAAGATGACAACAAAATCATCGTCAACAACAACGATTACAGCAGCAACAATCACGATAACAACGTTGGTAACGAAAGGCCGAGGGTTAGACACCAGCATAGCCATTCCATGGATTTGTCCATCCAGCCGGAGATGCTGGTCTCCGGTGCCGATGACGTGTCCGGCGTGGATACCAAAAGGGCTATGTCGACTGACAAGCTTGCTGAGCTTGCCTTAATTGATCCCAAGCGGGCTAAAAGGATATGGGCAAACCGACAGTCTGCTGCAAGATCAAAAGAAAGGAAGATGCGTTACATTTCTGAGCTTGAAAGGAAAGTGCAGACATTGCAAACAGACGCAACATCCTTGTCTGCACAATTAACTCTCTTGCAGAGAGATACAAACGGACTGAATGCTGAGAACGGTGAGTTGAAGTTGCGGTTGCAAACCATGGAGCAACAGGTTCACTTGCAAGATGCATTAAATGATGCATTAAAAGAAGAAATTCAGCATTTGACATTAATGACTGGACAAGCCATTTCAAATGGAGGACACTTTGCTTCATTTGGTGGTGGGCAACAATTCTATCCCAATAATCACGCCATGTACACTCTTTTGGCTGCACAAAAGTTTCAACAACTTCAAATTCAATCCCAGAAGCAGCAGCAGCAGCATCAACTTCAGCAGCAGCAACAACAATTTCAGCAACAACAACAACTTCAGCATCAACTACATCAGCAACAACAGCAACAACAAACAACAGCAACAGGTACTGTAACATCAACAAATGTGGTGCTTGAATAA 1017 0.4602 MERDKDNKSPPLPPSSSSSQPFSHDIVGMPDNPIKNRGHRRAHSEIITLPDDLTFDTDLPLDDDFLALVDHFNSPPLPEDDNKIIVNNNDYSSNNHDNNVGNERPRVRHQHSHSMDLSIQPEMLVSGADDVSGVDTKRAMSTDKLAELALIDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTDATSLSAQLTLLQRDTNGLNAENGELKLRLQTMEQQVHLQDALNDALKEEIQHLTLMTGQAISNGGHFASFGGGQQFYPNNHAMYTLLAAQKFQQLQIQSQKQQQQHQLQQQQQQFQQQQQLQHQLHQQQQQQQTTATGTVTSTNVVLE 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2671g00006 338 SUPERFAMILY Leucine zipper domain 154 205 IPR046347 GO:0003700|GO:0006355
Vium2671g00006 338 Gene3D - 153 206 - -
Vium2671g00006 338 Coils Coil 205 239 - -
Vium2671g00006 338 FunFam probable transcription factor PosF21 153 206 - -
Vium2671g00006 338 Coils Coil 170 197 - -
Vium2671g00006 338 SMART brlzneu 150 214 IPR004827 GO:0003700|GO:0006355
Vium2671g00006 338 Coils Coil 282 318 - -
Vium2671g00006 338 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 8 326 - -
Vium2671g00006 338 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 152 215 IPR004827 GO:0003700|GO:0006355
Vium2671g00006 338 CDD bZIP_plant_RF2 155 204 IPR044759 GO:0003700|GO:0006355
Vium2671g00006 338 Pfam bZIP transcription factor 154 208 IPR004827 GO:0003700|GO:0006355
Vium2671g00006 338 MobiDBLite consensus disorder prediction 1 40 - -
Vium2671g00006 338 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2671g00006 Vium-Chr2671 24397 29175 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2671g00006 10 279 bZIP Transcription Factor Family AT1G06070 63.036 4.38e-121 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium2671g00006 bZIP_1 1.8e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2671g00006 - - vun:114169967 476.478