Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2671g00001 TCGGACAGCGTAACTACTTATTCCGCTCGCAGTTACGCCTTCATCTACTTCAAGCGCGTCGAAGACGCCAAAGCCGCCAAAAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCTAAGGCATGCAAACAGCTTTGGGTGGGGGGTATTAGCCCAGCTGTTACAAAGGAAGAATTGGAGGCTGAATTTCGTAAAATTGGTACAATTGAGGATTTTAAGTTCTACAGAGACCGAAATTCTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTTCCCAGGCCATGAAAATAATGAATGGGAAGCGAATAGGTGGGGAGCATATTCGTGACTTCCTTCGAAACCAATCGATAAAAAGGGATCAGTTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGGCCTAGTGATGCTTATTCTGGTCAGAAAAGACCTCTGCATTCACAGGCTCCAATGGGGAGGAAAGGCGATGCTCAACCAAGTAATGTTTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGATGAACAAATGCTGCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCCTTGAGGAATTATTCTATCGTAGAGTTTAGAAGTGTTGATGAAGCTCGACGTGCTAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCCAGCAATGACCTAGTACATGGAAGTGATTATCCTGGCTTTTTTGCTGGAAGTAATGGACCGAGGCCTGATGTATTGCTGAATGAGAATCCATTCCGACAGTTACAAATGGATGCATTTGGTCATAATCGTCCAGTGGTTCCAAATAATTTTACTGGTCAATTACCACCTAGTGGTATTATGGGTCCAAATGTACCATTGCGACCTTTTGGTCCACTTAGCAATGTTGATTCTGTTATTTCTGGCCCTGAGTTTAATGAGATTAGTGCCCTCCACAAAATTCAAGATGGCAGCTCCAAGAGTAACATGGCTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCAGTTGCTAGGCATCCTACAAGATCCACCACCGGTGCATGGGATGTACTTGACATAAACCATATTCCTAGAGATTCTAAACGTTCAAGGATTGATGGACCCTTATCTGTTGACGAAGCCCCATTTCCTTTAAGGAATATAGATGATCGTGGGTTATCCCTGGAGCAATCTTATGGGATAGATCCATCAATGGATAGAGGTGGTTCTGGTCCATTTGCAAATATTCAAGGAAAAAATCACCTTGGTCCAATGAGCTCAAGGATTACAGCTGGAGTACATGGTATGGTCCAACCTGATAATGATCATATTTGGCGTGGAATCATTGCAAAAGGTGGAACTCGTGTTTGTAAGGCTAGATGTGTACCAATTGGGAAAGGGATTGGGACTGAGCTTCCTGATTTCATTGATTGCTCAGCTAGGACGGGATTGGATATACTCACTAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGCGAAGATGATTTTGCATCATATACTGAATTCCTTCGATATCTCAGTGCAAATAATCGTGCTGGTGTTGCCAAATTTGGTGATAACACCACATTATTCTTGGTGCCTCCTTCTGATTTTCTCACTAGAGTTTTGAAAGTCAGTGGACCCGAGCGACTATATGGTGTCTTTCTGAAGTTTCCTCAAGTGCCAAGTAGTGCACCTATGCAGCAAGCATCGAACTTGCCTGTACCGACAAGTCAGTTTATGCAGCAAATTCCTCTTTCACAGACTGAATATGGTTTGATTCCTATCAAAGAGGAACAGGTTGTGTCAATGGATTATAACAGACAATTGCGTGAGGATTCTAAGCTTCCTAGTAAACCAGCCTACCTGCCTACAGGAGGGCCTCCTTTAGTTCATTCTGTACCTCCAGATTATGCTCCTAATAATGCTATTGCTGGGTCCCAAGCAGGAGTTGCATTAACTCCTGAGCTGATTGCAACTTTAGCATCTTTTCTCCCTTCAACTACACCATCTTCTGCCATTGATGGTGCCAAGCCTGGAGTAGGTTCCTCAACCATGAAGCATCCTTTTCCTCCTGTGGCACCAAATGATGGAAGTCAATCCTATTTATGGAAACAAGACAATCAAAGTGCTGATCAAACCACTCATCCTCCTCAACAGATGAGGAGTATGTATAGCGTTCACAATGCTCACTATCAGCCATATCCACCAGCATCTGCTCCAGCTGGCAATCCTGCTCAAGTGGTCTCTAGCAGTTCTCACATCCAAGACACTGCAGCCACCATGCATCAGCAAGGTGCTGTTTCATCTAGACACATGCCTAATTTCATGATGGCCGGTCAAAGTGGACAGGTAGCTGCATCTCCTCATGGCAGTCAGCATTATCAAGTTAAAGTCTCCCCAAGCAATCAGAAAGGCTTTGGAGTTGTGCAGGGAACGGATGCCCCTGTGTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACATTCCACTGTCTTTCCAGCAACCTAATAATTCTATTGCCTTAACTAATCAAGTTAGTGGTGCTAATTCTTCACAACAGCTGACTGCCATGCCATACACAGTAGACCAAGTAAACTCGGACACCACAAATCAGCAACTTTCTGTTTCTGGAGTCGGTCAAGGCACACCAGAGGTGGAGGCTGATAAGAACCAGAGATATCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAGAAGCAACAACAAGCGGCAGGAGGTCATGGACCTGGAATTCAACAATGA 2868 0.4386 SDSVTTYSARSYAFIYFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISPAVTKEELEAEFRKIGTIEDFKFYRDRNSACVEFFNLEDASQAMKIMNGKRIGGEHIRXDFLRNQSIKRDQLLDYGQFQGKSLGPSDAYSGQKRPLHSQAPMGRKGDAQPSNVLWIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSIVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNDLVHGSDYPGFFAGSNGPRPDVLLNENPFRQLQMDAFGHNRPVVPNNFTGQLPPSGIMGPNVPLRPFGPLSNVDSVISGPEFNEISALHKIQDGSSKSNMAPNWKRPSPPAPGMLSSPAPVARHPTRSTTGAWDVLDINHIPRDSKRSRIDGPLSVDEAPFPLRNIDDRGLSLEQSYGIDPSMDRGGSGPFANIQGKNHLGPMSSRITAGVHGMVQPDNDHIWRGIIAKGGTRVCKARCVPIGKGIGTELPDFIDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSANNRAGVAKFGDNTTLFLVPPSDFLTRVLKVSGPERLYGVFLKFPQVPSSAPMQQASNLPVPTSQFMQQIPLSQTEYGLIPIKEEQVVSMDYNRQLREDSKLPSKPAYLPTGGPPLVHSVPPDYAPNNAIAGSQAGVALTPELIATLASFLPSTTPSSAIDGAKPGVGSSTMKHPFPPVAPNDGSQSYLWKQDNQSADQTTHPPQQMRSMYSVHNAHYQPYPPASAPAGNPAQVVSSSSHIQDTAATMHQQGAVSSRHMPNFMMAGQSGQVAASPHGSQHYQVKVSPSNQKGFGVVQGTDAPVLYNSQAFQQPNNIPLSFQQPNNSIALTNQVSGANSSQQLTAMPYTVDQVNSDTTNQQLSVSGVGQGTPEVEADKNQRYQSTLQFAANLLLQIQQKQQQAAGGHGPGIQQ 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2671g00001 956 SUPERFAMILY RNA-binding domain, RBD 10 48 IPR035979 GO:0003676
Vium2671g00001 956 MobiDBLite consensus disorder prediction 419 450 - -
Vium2671g00001 956 CDD RRM_SF 54 118 - -
Vium2671g00001 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 40 IPR000504 GO:0003723
Vium2671g00001 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 184 238 IPR000504 GO:0003723
Vium2671g00001 956 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 117 IPR000504 GO:0003723
Vium2671g00001 956 Gene3D - 162 254 IPR012677 -
Vium2671g00001 956 Gene3D - 3 50 IPR012677 -
Vium2671g00001 956 CDD SPOC_FPA-like 467 587 - -
Vium2671g00001 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 47 IPR000504 GO:0003723
Vium2671g00001 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 124 IPR000504 GO:0003723
Vium2671g00001 956 MobiDBLite consensus disorder prediction 729 757 - -
Vium2671g00001 956 FunFam flowering time control protein FPA 165 260 - -
Vium2671g00001 956 MobiDBLite consensus disorder prediction 339 372 - -
Vium2671g00001 956 MobiDBLite consensus disorder prediction 143 168 - -
Vium2671g00001 956 SMART rrm1_1 53 120 IPR000504 GO:0003723
Vium2671g00001 956 SMART rrm1_1 173 241 IPR000504 GO:0003723
Vium2671g00001 956 SUPERFAMILY RNA-binding domain, RBD 53 243 IPR035979 GO:0003676
Vium2671g00001 956 MobiDBLite consensus disorder prediction 703 778 - -
Vium2671g00001 956 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 245 IPR000504 GO:0003723
Vium2671g00001 956 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 939 - -
Vium2671g00001 956 Pfam SPOC domain 462 579 IPR012921 -
Vium2671g00001 956 Gene3D - 51 129 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2671g00001 Vium-Chr2671 5 11613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2671g00001 9 132 Eukaryotic Initiation Factors Gene Family AT2G23350 26.000 7.57e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2671g00001 - - gmx:100777570 1652.88