Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium266g00004 ATGGACCACGACTCAGAAGCATCACGCGAAACAGGTTCTCCGACAACAGTTCAGAGTAATGGGTATTCGGACGAGGAAGTGATACTCGCATCGTCGCGGCCCAAGAAGCGAGCTGGGAGAAGAGTGTTCAAGGAGACTAGGCACCCCGTGTACCGGGGAGTGCGACGGAGGAATAACAACAAGTGGGTCTGCGAGATGCGAGTTCCCAACAACAACTCACGGATTTGGCTCGGCACCTACCCCACGCCGGAAATGGCTGCGCGGGCGCACGACGTTGCGGCCCTCGCGCTCAGGGGAAAGTCCGCCTGCGTCAATTTCGCGGACTCCGTGTGGCGCCTGGCGGTGCCTGACAGCACAGACGCGGAGGAGATACGGCGAGCGGCGGTGGAGGCTGCCGAGGCATTTATGGGTGAGGATGTTAGCCAACAGCAGAGGAGTGAAGAAGTTGAAGATCCCCCGCGACTGCAACAAGAAGAGATGTCGGAAGTTGAAGAGTTGCATGATTTGCTTCTGCGAATTGCGAATGAGCCTTTGATGTCTCCTCCTCCTTGTGTGAGAGATGGTAGGGAGTGGAATGACGTGGAGATATTTGATGCTGAGATTTCACTGTGGAGCTTTTCAATTTGA 627 0.5582 MDHDSEASRETGSPTTVQSNGYSDEEVILASSRPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNNNSRIWLGTYPTPEMAARAHDVAALALRGKSACVNFADSVWRLAVPDSTDAEEIRRAAVEAAEAFMGEDVSQQQRSEEVEDPPRLQQEEMSEVEELHDLLLRIANEPLMSPPPCVRDGREWNDVEIFDAEISLWSFSI 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium266g00004 208 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Vium266g00004 208 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Vium266g00004 208 Pfam AP2 domain 49 99 IPR001471 GO:0003700|GO:0006355
Vium266g00004 208 SUPERFAMILY DNA-binding domain 50 109 IPR016177 GO:0003677
Vium266g00004 208 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Vium266g00004 208 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vium266g00004 208 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Vium266g00004 208 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Vium266g00004 208 MobiDBLite consensus disorder prediction 1 39 - -
Vium266g00004 208 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Vium266g00004 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 205 IPR045277 GO:0003700
Vium266g00004 208 MobiDBLite consensus disorder prediction 10 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium266g00004 Vium-Chr266 12545 13476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium266g00004 24 206 AP2-EREBP Transcription Factor Family AT1G63030 51.892 1.15e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium266g00004 AP2 6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium266g00004 - - gmx:100789097 279.641