Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2668g00001 ATGATGGCTTCTTCTAGCTACTCGAATTCTCCATGTGCAGCGTGCAAGTTTCTGAGGAGAAAGTGCATGCCAGACTGCATTTTTGCGCCATATTTTCCTCCAGAGGAGCCTCAGAAGTTTGCAAACGTGCACAAGATCTTTGGTGCAAGCAACGTGAGCAAGATTCTGAACGAGGTGCAACCCTATCAGAGAGAAGATGCTGTGAACTCTCTGGCATACGAAGCAGAAGCAAGGATCAAAGATCCTGTGTATGGTTGTGTTGGTGCCATTTCAGTGCTGCAAAGGCAAGTTCTCAAGCTCCAAAAGGAGCTTGATGCTACAAATGCTGATTTGATCCGCTACAGCACTTGCAGTGAAATGCCAAACAGTAGTAGCAGTAGTAGTCTTCATCATGGAGGAAGAAGCAAGATGAGTAGTGATGATGGTGGTGGTGGCGGCGGCGGAGGTTCTTCACATGGTTTAAGCTTCTATTATTCTTCTGCTAATTGGAACAATGATCATTCTGAAAATGGCTACCCCAGAGGAGATATATAA 534 0.4551 MMASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKILNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKELDATNADLIRYSTCSEMPNSSSSSSLHHGGRSKMSSDDGGGGGGGGSSHGLSFYYSSANWNNDHSENGYPRGDI 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2668g00001 177 Coils Coil 90 110 - -
Vium2668g00001 177 MobiDBLite consensus disorder prediction 118 133 - -
Vium2668g00001 177 MobiDBLite consensus disorder prediction 118 149 - -
Vium2668g00001 177 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Vium2668g00001 177 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vium2668g00001 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2668g00001 Vium-Chr2668 2567 3421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2668g00001 5 117 AS2 family AT3G27650 84.071 6.75e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium2668g00001 LOB 2.6e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2668g00001 - - gmx:100788656 246.128