Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2666g00009 ATGAATGCTTCAAAGTCCTTTGGGAAAAGACATGAAGGTTGCTCCTGTGGCTCTTCCTTTGGCAAAGAATTGAGCGAAGTGGTTGTGAAACGCAGGAAGGTGAATCGAGCATTGGTGACATTCAGGAACTTGGTCGACAAGCTAATGCATCAGTACAAAGTGTACGAACCTGAGAATCCTAGGGTTAAGAGTAAAGCTCTGATGGAAGCAACAATGACAATGAGAAGAGAACATCAATGGGAGAACACTCAAAAGTGCGTGGGACATATACCAGGAATCGATGTGGGTGATATTTTTCAGTACTGGCTTGAACTCAATGTCATTGGTCTCCATAGGCAGTTTTGGAATGGAATTGATTATAAGATAATGGACAACAGCACTTTGGCCACTAGCATTGTGGTAACAGATCGCTATGATAATTCTAGAAGATCTAATGGTACCTTGGTTTATGAAGGTCAAGGAGGAAATCCCACCTTTGGGAAAAAAGTTTCACTTCGTGATCAAAAACTGGAAGGAGGAAATTTGGCGCTGAAAAATAGCATGCAAGCTAGAAGTCCAGTGAGAGTTATATTCAAAGTTTGTGGAAAGTTTGATGGTGCATTCAGTTACAGTAGCAGTAATTCTCATTACTCATATGTTTATGATGGTTTGTATTTGGTGGATACAATGAACATAGAAAGAGGGAGATATGGAAAGCTTGTATTCAAGTTTGGACTGCATAGAATTTTAGGACAACCTGAAACTTGCGTTTCCCTTAAGGACCATGGCGAAAATTCAAGGCAACTTGCAAATTTTAGTCCTAGGAAGAAACTCAAGCCAAAAGTCTGTGTTGCCGAAAAGGAGGTTATTCGAGTTAAAGATCTTTCAAATGGTCGGGAGAAGTTTACTGTTAGGGTGGTGGCTCCAATTGATTGTGTTCAGCTACCCACATCCTTTGATTATGTTGTAAGTAACATTTACTCAAAGAAGTTCGAGCAGGCAATTCTTTGTGGCTGTGATTGTGCTGATGGGTGTGTTGACAAAGAAAATTGTGTCTGCTTCAGGAAGACAAAGGGTAGCAAAATGCCAAATGGTTGTAATAAAAGACTTGCTTCTGAGATGGAATCATCGCTTATATATGAGTGTGGGCCATCTTGCAAGTGTTCCTCTTCTTGCATCAACCGAGTAACTCAGAATGGTATTCGGTTTCAGCTAGAAATCTTCAGGACAGAACAGAAAGGTTGGGGTGTTAGAACACGCTCTTTCATTCCCTCTGGAAGCTTTGTATGTGAGTATATTGGAGAAGTCAGTGACTATATGAAGGCTAGATGGAGGCTAGATAATGACTATATATTTCACATGGGTGTTGGAAAGGTCTTCATCAATGCAAGCAAATTTGGAAACGTTGGAAGATTCATAAATCATAGTTGTGCTCCAAATCTCCGTATCAAAGATGTTATGTATGATCACAGTGACAAGAATCTTCCTCACAAAATGCTGTTTGCTTTAAAGGACATTCCTGCTGGTAGAGAGCTGACTTATGACTATAATTCCTTCAATGGAAAATTTATCAAGTGTAGGAATAATAGCTGCTGCTGTGGAACACCGGAATGCAATGGACGGATCTACATTTGA 1614 0.4015 MNASKSFGKRHEGCSCGSSFGKELSEVVVKRRKVNRALVTFRNLVDKLMHQYKVYEPENPRVKSKALMEATMTMRREHQWENTQKCVGHIPGIDVGDIFQYWLELNVIGLHRQFWNGIDYKIMDNSTLATSIVVTDRYDNSRRSNGTLVYEGQGGNPTFGKKVSLRDQKLEGGNLALKNSMQARSPVRVIFKVCGKFDGAFSYSSSNSHYSYVYDGLYLVDTMNIERGRYGKLVFKFGLHRILGQPETCVSLKDHGENSRQLANFSPRKKLKPKVCVAEKEVIRVKDLSNGREKFTVRVVAPIDCVQLPTSFDYVVSNIYSKKFEQAILCGCDCADGCVDKENCVCFRKTKGSKMPNGCNKRLASEMESSLIYECGPSCKCSSSCINRVTQNGIRFQLEIFRTEQKGWGVRTRSFIPSGSFVCEYIGEVSDYMKARWRLDNDYIFHMGVGKVFINASKFGNVGRFINHSCAPNLRIKDVMYDHSDKNLPHKMLFALKDIPAGRELTYDYNSFNGKFIKCRNNSCCCGTPECNGRIYI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2666g00009 537 SUPERFAMILY PUA domain-like 70 252 IPR015947 -
Vium2666g00009 537 SMART set_7 396 516 IPR001214 GO:0005515
Vium2666g00009 537 ProSiteProfiles Pre-SET domain profile. 330 393 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium2666g00009 537 SUPERFAMILY SET domain 275 518 IPR046341 -
Vium2666g00009 537 Gene3D SET domain 265 520 IPR046341 -
Vium2666g00009 537 Pfam SET domain 407 510 IPR001214 GO:0005515
Vium2666g00009 537 SMART G9a_1 83 245 IPR003105 -
Vium2666g00009 537 ProSiteProfiles YDG domain profile. 88 241 IPR003105 -
Vium2666g00009 537 ProSiteProfiles Post-SET domain profile. 520 536 IPR003616 -
Vium2666g00009 537 SMART preset_2 285 380 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium2666g00009 537 Pfam SAD/SRA domain 87 245 IPR003105 -
Vium2666g00009 537 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 30 528 - -
Vium2666g00009 537 ProSiteProfiles SET domain profile. 396 510 IPR001214 GO:0005515
Vium2666g00009 537 Pfam Pre-SET motif 289 388 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vium2666g00009 537 Gene3D - 70 264 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2666g00009 Vium-Chr2666 97980 100830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2666g00009 66 533 Su(var)3-9 homologs AT1G73100 34.902 4.35e-79 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vium2666g00009 SAD_SRA 7.2e-39 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2666g00009 - K11420 vun:114192587 958.362