Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2666g00003 ATGGGCGTTGAGAACTACCACGTGATTGAACTCGTAGGCGAGGGTTCCTTCGGGAAGGTATACAAGGGAAGGCGCAAGCACACGGGGCTGACCGTTGCAATGAAGTTCATAATGAAGCATGGGAAAACTGAGAAGGATATTCACAATTTAAGGCAGGAAATCGAGATCTTAAGAAAGTTGAAGCATGAAAATATCATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTCGTTACAGAATTTGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGATAAGTGCCTTCCGGAAGGCCAAGTTCAAGCAATTGCAAAGCAATTGGTAAAAGCTTTACACTATTTGCATTCCAATCGGATCATCCATCGCGATATGAAGCCCCAAAATATTCTAATTGGTGCTGGATCTGTTGTCAAGCTTTGTGATTTTGGGTTTGCACGTGCAATGTCTACAAATACAGTTGTTTTGCGATCTATAAAAGGCACTCCGTTGTATATGGCTCCAGAGCTTGTACGTGAACAACCTTACAACCACACTGTAGATTTATGGTCTCTTGGCGTCATACTGTATGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGACACATTGTTAAGGATCCTGTTAAATATCCTGATCGCATGAGTCCAAATTTCAAAAGCTTTTTGAAGGGTTTGCTTAACAAGGCACCGGAAAGTCGTCTAACTTGGCCGGCTCTTCTTGAGCACCCATTTGTTAAAGAAACCTCTGATGAACATGAGGCCAGGGAATTGCGAGAGATAAATGGTTCACGCATGCGCAGTGAAGCAGAACGGATGGTTGAAGGGAAAACCATTCAAACTCCAACAGGCAAAAACAATCACATGGCAGGTATGGAGGGGCATATTGCTTCACCGCTTCAGAGTGAAGCTCAGTTAAATGGTCATAACATAGACAGAACTAACTCTTCAGTGCTTGATGATTCCCCGGGATTTTCAAATCAAAATATCGTAGAGTCAGGCTGCCAAAGATTGGACAGACTTGAAAATAACTCTCGTACAGTTAAAAGTGCAAAAATAATTGGTCAAGATAATGAAGCGTTGGGACATATTCTGCTACCACTGCAAAAATGGTCAAAAGGATCTCAAAACATTTGCAGTGATCAAGATGTTCCTCAATCAAATCAGTCATTGAGGATTCTCTCAAACCTAGTTGCAGCTGGTGCCTTCAATTCTAGTGGACGAATAGATGAACTAATAAGAGAGCTTCTTGTGTTTACTGGATCTGTTATAGCCATTAAGTCCTCTGAAGTTACTGACATGATAGCAAAGGGTTTCTCTATCACTAAGATTTTGCTAGATAATGGCGGAAGTTGCTTTTCAAGATCTTATCTAAGTCACTGGGTTGAATTTGTTGAGATCTATTCTCAGGTTGTAGCATCAAATAATGATGCATCTGGAAGAGTTCTCTATGAATCCAGTGCTTGCATTACAGTCATGCTGTCTGGAGTTGCTCAGGTGCTCATGTCATCTCAAATTTCAGGCCAAGAGACATCGAATGAAACAGCTAACAAAATTTTAGACCACGCAAAAACGATGGGTTTAGTGGACCATCTATGTCTGTGTTTAGCCACATCTGGATCAAGTCTTATTTCTGGTTCTTCCAACATGTTAAGGGCTGCTTCTGAAGCATGCAGAGCTATCTGGTCTTTGATTAATGCACTGGATATTCTTTTTATGAAAAAATGTGCCATTTTGTTTCCCATTAATGCGTTGCGCAGTCATTCTTTGCATAGGATGGAAGTTTTGCAACATGAGCAAAATCTCTTTGACAAAGCAGATTCAGCAAAAATTGTTGATTCAATGACAAGAGCATTTCTTAGATCTAAAGCTGTCCAGGTTGCTGTTTACTATTGTTTTCACCAACGACTTGAGTCTGCAATGAATTGTTGTCTTCAGCTTTTGTCAAGGTGCTGCCTACATAATGAAATTGTTCCAGCTGTCCTTTGTGGTCTTCCCAGTTCCCTTCCGGTGACTACTGTTGTTAGTGGGGGTGGTGATGGAACTATTGTTTCAGAAGTTTTCACTGTTTTATCATTATGCAGTTCCTCTGTTAACAAAGACGCACAGAGTATAGAACCAAGTAATGTAAAGTTCAAATTAACAACTCCTTCTGCTCTGGTTCGACATTCATGTCTTGTTCTCGCAATAATTGCTCAGTGTTTGAAGTCAACGGGAAGAAATTCAGCAATGTTTATGCTCACTACCGCACCAAAGAAGCAGCTTGCTCGACTTTCGGTGCTTTCACATCATATTAGTCATGATGATAAAATAAAAGCCTCCATCGAACCTCAAAGTGCATCAGCCATGTTGGCTTTGGCATCCATTCTGTCTCTCGAGTCTGGGGCTTTAGTTGAGTCTCCAATATCTGAAATTGCAATACCTTTAATTCCTCGAACCTCTACACTAAGTGATCATCTTAAATTTTCATGTGGCAACGAAAATGAATTGGACCCTTGCAACTTCAGTGGGAAACTCTCTTATTGGCAAGGGGTAAGAGATGGGTATGTTGGTCTTTTAGATTCCAGAATCAAGTGGGGAGGACCATTGGCTGTTCAGCAGTTGTGTGCAAGTGGCATTCCTCTACTTCTTATGGGCTTATTAGGCAATGATGTTTTAAACGCATCTCATGGAACCGACCATCAAAATGATAGAGTTGGATTGTCTCCAATTGGTGTTGTATGGACAATTTCATTATTATGTCATTGTCTTTCTGGAGGTGCTTTGGTATATCGTCAAATTTTGATTAGGAATGAACATATTAAGCTCATTTCTAACTTGATATGTGATGTTCATATCAAGTTAGTGAAATGCTGGATCGGACCTGGTGGAGGGAAAGCAGGAGTCAGAGATCTAATAAATGCTGTGATAGATATCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACCTGGCTTGCCTTCAGCCACTGCTTCTGTCAGCAGTGGCTTTCTTCTTAATATGGGCTCCCCTGGTCAGAGAGTATGCATGGAAGATAAGGGTATAGTTAAGGCAATTGAAGAAGATATGGGAAAATATATTAAGATACTTGTAGAGGTTGGTGTGCCTGGTATTATCCTTCGGTGTGTAGATCATATGGATTTGAATGATTTGGGCAGGCCTGTCGCATTTCTGGCTAAGATAGTATGTCACCGACCTTTGGCAATCCAACTCGTGAGTAAAGGTCTTTTGGATCCAAATAGGATGAGAAAGTTGTTTGATTGTTCGGGCCCAAAAGAGGTCACACTGGATGCTCTTATGATTATTTCTGATCTGGCTCGCATGGACAAGGTATTCTATGAGTACATTAAAGGTGCTACTATTTTGGAGTTCTTGAAAGATTTTCTTTCACACGAGGATCCCAATGTGCGTGCCAAAGCCTGCAGTGCTCTCGGGAACATGTGTCGTCATAGCGCCTATTTTTATAGTTCTCTTGCTAGACATCAAATTGTTGGTATCCTTATCGAAAGATGTTCTGATCCAGACAAACGAACACGAAAGTTTGCTTGTTTTGCTATTGGAAATGCAGCTTACCACAATGACTTGTTGTATGAGGAGCTGAGGAGATCGATTCCTCATTTAGCAAATTTGTTACAAATGGCTGAGGAAGATAAGACTAAGGCAAATGCAGCGGGAGCACTTAGCAATCTGGTTCGCAACTCTGACAAACTTTGTGAAGACATAGTATCTAAAGGAGCTGTTCAGTCTCTGCTGAAATTAATTTCTGATTGTGCGGTATCAGCCCTAAATCCAGGCAGAAATGATTCAGGAAACGAATCTCCGCTTAAGATCGCTCTGTTTTCCCTTGCAAAGATGTGTGCACATCCACTCTGTAGACAATTCATCCGTTCATCACCTTTGTTCCCTGTGATTGGAAGGCTTCAGCAGTCTCCAGAATCATCCATAGCCAAATATGCCTCCGTCATCATTGGTAAAGTTGCTGATCCTTGA 4020 0.4104 MGVENYHVIELVGEGSFGKVYKGRRKHTGLTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEGQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDRMSPNFKSFLKGLLNKAPESRLTWPALLEHPFVKETSDEHEARELREINGSRMRSEAERMVEGKTIQTPTGKNNHMAGMEGHIASPLQSEAQLNGHNIDRTNSSVLDDSPGFSNQNIVESGCQRLDRLENNSRTVKSAKIIGQDNEALGHILLPLQKWSKGSQNICSDQDVPQSNQSLRILSNLVAAGAFNSSGRIDELIRELLVFTGSVIAIKSSEVTDMIAKGFSITKILLDNGGSCFSRSYLSHWVEFVEIYSQVVASNNDASGRVLYESSACITVMLSGVAQVLMSSQISGQETSNETANKILDHAKTMGLVDHLCLCLATSGSSLISGSSNMLRAASEACRAIWSLINALDILFMKKCAILFPINALRSHSLHRMEVLQHEQNLFDKADSAKIVDSMTRAFLRSKAVQVAVYYCFHQRLESAMNCCLQLLSRCCLHNEIVPAVLCGLPSSLPVTTVVSGGGDGTIVSEVFTVLSLCSSSVNKDAQSIEPSNVKFKLTTPSALVRHSCLVLAIIAQCLKSTGRNSAMFMLTTAPKKQLARLSVLSHHISHDDKIKASIEPQSASAMLALASILSLESGALVESPISEIAIPLIPRTSTLSDHLKFSCGNENELDPCNFSGKLSYWQGVRDGYVGLLDSRIKWGGPLAVQQLCASGIPLLLMGLLGNDVLNASHGTDHQNDRVGLSPIGVVWTISLLCHCLSGGALVYRQILIRNEHIKLISNLICDVHIKLVKCWIGPGGGKAGVRDLINAVIDILAFPFVALQNAPGLPSATASVSSGFLLNMGSPGQRVCMEDKGIVKAIEEDMGKYIKILVEVGVPGIILRCVDHMDLNDLGRPVAFLAKIVCHRPLAIQLVSKGLLDPNRMRKLFDCSGPKEVTLDALMIISDLARMDKVFYEYIKGATILEFLKDFLSHEDPNVRAKACSALGNMCRHSAYFYSSLARHQIVGILIERCSDPDKRTRKFACFAIGNAAYHNDLLYEELRRSIPHLANLLQMAEEDKTKANAAGALSNLVRNSDKLCEDIVSKGAVQSLLKLISDCAVSALNPGRNDSGNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYASVIIGKVADP 1339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2666g00003 1339 PANTHER PROTEIN KINASE RELATED 3 1336 - -
Vium2666g00003 1339 ProSiteProfiles Protein kinase domain profile. 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2666g00003 1339 Pfam HEAT repeats 1133 1237 - -
Vium2666g00003 1339 ProSitePatterns Protein kinases ATP-binding region signature. 12 39 IPR017441 GO:0005524
Vium2666g00003 1339 SMART arm_5 1243 1297 IPR000225 GO:0005515
Vium2666g00003 1339 SMART arm_5 526 576 IPR000225 GO:0005515
Vium2666g00003 1339 SMART arm_5 1119 1159 IPR000225 GO:0005515
Vium2666g00003 1339 SMART arm_5 1203 1242 IPR000225 GO:0005515
Vium2666g00003 1339 FunFam Serine/threonine-protein kinase 36 3 317 - -
Vium2666g00003 1339 FunFam Serine/threonine-protein kinase TIO 1066 1335 - -
Vium2666g00003 1339 SMART serkin_6 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2666g00003 1339 Gene3D Transferase(Phosphotransferase) domain 1 2 317 - -
Vium2666g00003 1339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vium2666g00003 1339 Pfam Protein kinase domain 6 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2666g00003 1339 Coils Coil 40 60 - -
Vium2666g00003 1339 Coils Coil 1207 1227 - -
Vium2666g00003 1339 CDD STKc_STK36 4 256 - -
Vium2666g00003 1339 FunFam Aurora kinase A 1 88 - -
Vium2666g00003 1339 Gene3D - 1065 1335 IPR011989 -
Vium2666g00003 1339 SUPERFAMILY Protein kinase-like (PK-like) 4 273 IPR011009 -
Vium2666g00003 1339 SUPERFAMILY ARM repeat 1032 1336 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2666g00003 Vium-Chr2666 31830 47947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2666g00003 1 245 AGC Kinase Gene Family AT3G08720 38.866 1.21e-45 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Vium2666g00003 Pkinase 1.7e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2666g00003 K06228 - gmx:100792102 2340.46