Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2666g00002 ATGGGCGTTGAGAACTACCACGTGATTGAACTCGTAGGCGAGGGTTCCTTCGGGAAGGTATACAAGGGAAGGCGCAAGCACACGGGGCTGACCGTTGCAATGAAGTTCATAATGAAGCATGGGAAAACTGAGAAGGATATTCACAATTTAAGGCAGGAAATCGAGATCTTAAGAAAGTTGAAGCATGAAAATATCATTCAAATGCTTGATTCCTTTGAAAGCCCGCAAGAATTTTGTGTCGTTACAGAATTTGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGATAAGTGCCTTCCGGAAGGCCAAGTTCAAGCAATTGCAAAGCAATTGGTAAAAGCTTTACACTATTTGCATTCCAATCGGATCATCCATCGCGATATGAAGCCCCAAAATATTCTAATTGGTGCTGGATCTGTTGTCAAGCTTTGTGATTTTGGGTTTGCACGTGCAATGTCTACAAATACAGTTGTTTTGCGATCTATAAAAGGCACTCCGTTGTATATGGCTCCAGAGCTTGTACGTGAACAACCTTACAACCACACTGTAGATTTATGGTCTCTTGGCGTCATACTGTATGAGTTATTTGTTGGCCAACCACCATTTTACACAAATTCTGTATATGCTCTCATCAGACACATTGTTAAGGATCCTGTTAAATATCCTGATCGCATGAGTCCAAATTTCAAAAGCTTTTTGAAGGGTTTGCTTAACAAGGAATTGCGAGAGATAAATGGTTCACGCATGCGCAGTGAAGCAGAACGGATGGTTGAAGGGAAAACCATTCAAACTCCAACAGGCAAAAACAATCACATGGCAGGTATGGAGGGGCATATTGCTTCACCGCTTCAGAGTGAAGCTCAGTTAAATGGTCATAACATAGACAGAACTAACTCTTCAGTGCTTGATGATTCCCCGGGATTTTCAAATCAAAATATCGTAGAGTCAGGCTGCCAAAGATTGGACAGACTTGAAAATAACTCTCGTACAGTTAAAAGTGCAAAAATAATTGGTCAAGATAATGAAGCGTTGGGACATATTCTGCTACCACTGCAAAAATGGTCAAAAGGATCTCAAAACATTTGCAGTGATCAAGATGTTCCTCAATCAAATCAGTCATTGAGGATTCTCTCAAACCTAGTTGCAGCTGGTGCCTTCAATTCTAGTGGACGAATAGATGAACTAATAAGAGAGCTTCTTGTGTTTACTGGATCTGTTATAGCCATTAAGTCCTCTGAAGTTACTGACATGATAGCAAAGGGTTTCTCTATCACTAAGATTTTGCTAGATAATGGCGGAAGTTGCTTTTCAAGATCTTATCTAAGTCACTGGGTTGAATTTGTTGAGATCTATTCTCAGGTTGTAGCATCAAATAATGATGCATCTGGAAGAGTTCTCTATGAATCCAGTGCTTGCATTACAGTCATGCTGTCTGGAGTTGCTCAGGTGCTCATGTCATCTCAAATTTCAGGCCAAGAGACATCGAATGAAACAGCTAACAAAATTTTAGACCACGCAAAAACGATGGGTTTAGTGGACCATCTATGTCTGTGTTTAGCCACATCTGGATCAAGTCTTATTTCTGGTTCTTCCAACATGTTAAGGGCTGCTTCTGAAGCATGCAGAGCTATCTGGTCTTTGATTAATGCACTGGATATTCTTTTTATGAAAAAATGTGCCATTTTGTTTCCCATTAATGCGTTGCGCAGTCATTCTTTGCATAGGATGGAAGTTTTGCAACATGAGCAAAATCTCTTTGACAAAGCAGATTCAGCAAAAATTGTTGATTCAATGACAAGAGCATTTCTTAGATCTAAAGCTGTCCAGGTTGCTGTTTACTATTGTTTTCACCAACGACTTGAGTCTGCAATGAATTGTTGTCTTCAGCTTTTGTCAAGGTGCTGCCTACATAATGAAATTGTTCCAGCTGTCCTTTGTGGTCTTCCCAGTTCCCTTCCGGTGACTACTGTTGTTAGTGGGGGTGGTGATGGAACTATTGTTTCAGAAGTTTTCACTGTTTTATCATTATGCAGTTCCTCTGTTAACAAAGACGCACAGAGTATAGAACCAAGTAATGTAAAGTTCAAATTAACAACTCCTTCTGCTCTGGTTCGACATTCATGTCTTGTTCTCGCAATAATTGCTCAGTGTTTGAAGTCAACGGGAAGAAATTCAGCAATGTTTATGCTCACTACCGCACCAAAGAAGCAGCTTGCTCGACTTTCGGTGCTTTCACATCATATTAGTCATGATGATAAAATAAAAGCCTCCATCGAACCTCAAAGTGCATCAGCCATGTTGGCTTTGGCATCCATTCTGTCTCTCGAGTCTGGGGCTTTAGTTGAGTCTCCAATATCTGAAATTGCAATACCTTTAATTCCTCGAACCTCTACACTAAGTGATCATCTTAAATTTTCATGTGGCAACGAAAATGAATTGGACCCTTGCAACTTCAGTGGGAAACTCTCTTATTGGCAAGGGGTAAGAGATGGGTATGTTGGTCTTTTAGATTCCAGAATCAAGTGGGGAGGACCATTGGCTGTTCAGCAGTTGTGTGCAAGTGGCATTCCTCTACTTCTTATGGGCTTATTAGGCAATGATGTTTTAAACGCATCTCATGGAACCGACCATCAAAATGATAGAGTTGGATTGTCTCCAATTGGTGTTGTATGGACAATTTCATTATTATGTCATTGTCTTTCTGGAGGTGCTTTGGTATATCGTCAAATTTTGATTAGGAATGAACATATTAAGCTCATTTCTAACTTGATATGTGATGTTCATATCAAGTTAGTGAAATGCTGGATCGGACCTGGTGGAGGGAAAGCAGGAGTCAGAGATCTAATAAATGCTGTGATAGATATCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACCTGGCTTGCCTTCAGCCACTGCTTCTGTCAGCAGTGGCTTTCTTCTTAATATGGGCTCCCCTGGTCAGAGAGTATGCATGGAAGATAAGGGTATAGTTAAGGCAATTGAAGAAGATATGGGAAAATATATTAAGATACTTGTAGAGGTTGGTGTGCCTGGTATTATCCTTCGGTGTGTAGATCATATGGATTTGAATGATTTGGGCAGGCCTGTCGCATTTCTGGCTAAGATAGTATGTCACCGACCTTTGGCAATCCAACTCGTGAGTAAAGGTCTTTTGGATCCAAATAGGATGAGAAAGTTGTTTGATTGTTCGGGCCCAAAAGAGGTCACACTGGATGCTCTTATGATTATTTCTGATCTGGCTCGCATGGACAAGGTATTCTATGAGTACATTAAAGGTGCTACTATTTTGGAGTTCTTGAAAGATTTTCTTTCACACGAGGATCCCAATGTGCGTGCCAAAGCCTGCAGTGCTCTCGGGAACATGTGTCGTCATAGCGCCTATTTTTATAGTTCTCTTGCTAGACATCAAATTGTTGGTATCCTTATCGAAAGATGTTCTGATCCAGACAAACGAACACGAAAGTTTGCTTGTTTTGCTATTGGAAATGCAGCTTACCACAATGACTTGTTGTATGAGGAGCTGAGGAGATCGATTCCTCATTTAGCAAATTTGTTACAAATGGCTGAGGAAGATAAGACTAAGGCAAATGCAGCGGGAGCACTTAGCAATCTGGTTCGCAACTCTGACAAACTTTGTGAAGACATAGTATCTAAAGGAGCTGTTCAGTCTCTGCTGAAATTAATTTCTGATTGTGCGGTATCAGCCCTAAATCCAGGCAGAAATGATTCAGGAAACGAATCTCCGCTTAAGATCGCTCTGTTTTCCCTTGCAAAGATGTGTGCACATCCACTCTGTAGACAATTCATCCGTTCATCACCTTTGTTCCCTGTGATTGGAAGGCTTCAGCAGTCTCCAGAATCATCCATAGCCAAATATGCCTCCGTCATCATTGGTAAAGTTGCTGATCCTTGA 3939 0.4085 MGVENYHVIELVGEGSFGKVYKGRRKHTGLTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHENIIQMLDSFESPQEFCVVTEFAQGELFEILEDDKCLPEGQVQAIAKQLVKALHYLHSNRIIHRDMKPQNILIGAGSVVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDRMSPNFKSFLKGLLNKELREINGSRMRSEAERMVEGKTIQTPTGKNNHMAGMEGHIASPLQSEAQLNGHNIDRTNSSVLDDSPGFSNQNIVESGCQRLDRLENNSRTVKSAKIIGQDNEALGHILLPLQKWSKGSQNICSDQDVPQSNQSLRILSNLVAAGAFNSSGRIDELIRELLVFTGSVIAIKSSEVTDMIAKGFSITKILLDNGGSCFSRSYLSHWVEFVEIYSQVVASNNDASGRVLYESSACITVMLSGVAQVLMSSQISGQETSNETANKILDHAKTMGLVDHLCLCLATSGSSLISGSSNMLRAASEACRAIWSLINALDILFMKKCAILFPINALRSHSLHRMEVLQHEQNLFDKADSAKIVDSMTRAFLRSKAVQVAVYYCFHQRLESAMNCCLQLLSRCCLHNEIVPAVLCGLPSSLPVTTVVSGGGDGTIVSEVFTVLSLCSSSVNKDAQSIEPSNVKFKLTTPSALVRHSCLVLAIIAQCLKSTGRNSAMFMLTTAPKKQLARLSVLSHHISHDDKIKASIEPQSASAMLALASILSLESGALVESPISEIAIPLIPRTSTLSDHLKFSCGNENELDPCNFSGKLSYWQGVRDGYVGLLDSRIKWGGPLAVQQLCASGIPLLLMGLLGNDVLNASHGTDHQNDRVGLSPIGVVWTISLLCHCLSGGALVYRQILIRNEHIKLISNLICDVHIKLVKCWIGPGGGKAGVRDLINAVIDILAFPFVALQNAPGLPSATASVSSGFLLNMGSPGQRVCMEDKGIVKAIEEDMGKYIKILVEVGVPGIILRCVDHMDLNDLGRPVAFLAKIVCHRPLAIQLVSKGLLDPNRMRKLFDCSGPKEVTLDALMIISDLARMDKVFYEYIKGATILEFLKDFLSHEDPNVRAKACSALGNMCRHSAYFYSSLARHQIVGILIERCSDPDKRTRKFACFAIGNAAYHNDLLYEELRRSIPHLANLLQMAEEDKTKANAAGALSNLVRNSDKLCEDIVSKGAVQSLLKLISDCAVSALNPGRNDSGNESPLKIALFSLAKMCAHPLCRQFIRSSPLFPVIGRLQQSPESSIAKYASVIIGKVADP 1312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2666g00002 1312 SMART arm_5 1176 1215 IPR000225 GO:0005515
Vium2666g00002 1312 SMART arm_5 499 549 IPR000225 GO:0005515
Vium2666g00002 1312 SMART arm_5 1092 1132 IPR000225 GO:0005515
Vium2666g00002 1312 SMART arm_5 1216 1270 IPR000225 GO:0005515
Vium2666g00002 1312 Gene3D - 1038 1308 IPR011989 -
Vium2666g00002 1312 Gene3D Transferase(Phosphotransferase) domain 1 2 305 - -
Vium2666g00002 1312 SUPERFAMILY Protein kinase-like (PK-like) 4 241 IPR011009 -
Vium2666g00002 1312 ProSitePatterns Protein kinases ATP-binding region signature. 12 39 IPR017441 GO:0005524
Vium2666g00002 1312 ProSiteProfiles Protein kinase domain profile. 6 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2666g00002 1312 CDD STKc_STK36 4 240 - -
Vium2666g00002 1312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vium2666g00002 1312 PANTHER PROTEIN KINASE RELATED 3 1309 - -
Vium2666g00002 1312 Pfam HEAT repeats 1106 1210 - -
Vium2666g00002 1312 FunFam Serine/threonine-protein kinase TIO 1039 1308 - -
Vium2666g00002 1312 FunFam Serine/threonine-protein kinase 36 3 310 - -
Vium2666g00002 1312 Coils Coil 40 60 - -
Vium2666g00002 1312 Coils Coil 1180 1200 - -
Vium2666g00002 1312 Pfam Protein kinase domain 6 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2666g00002 1312 SMART serkin_6 6 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2666g00002 1312 FunFam Aurora kinase A 1 88 - -
Vium2666g00002 1312 SUPERFAMILY ARM repeat 1005 1309 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2666g00002 Vium-Chr2666 31814 47947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2666g00002 1 247 AGC Kinase Gene Family AT3G08720 38.153 1.81e-43 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK ULK_Fused Vium2666g00002 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2666g00002 K06228 - gmx:100792102 2276.9