Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2664g00015 ATGGGTTCAGACGCTGCTGCCACAAAACTCTCCTCTTCTGAGTCCCTCAACGGTTTGAAATTCGGCCAAAAAATCTATTTTGAGGATGTGGGTCTGGCTACACCAGCCACTTCTCTTACTTCTGCTGCTGTTGCTGCTGGTGTTACTTCCTCTTCCTCTTCCTCTTCCTCAAGGAAAGGAAGAGGTGGGTCTGTTCAACCAGCTCAGCCTCCAAGGTGTCAAGTTGAAGGGTGTATGGTAGATCTGAGTGATGCTAAAGCTTACTATTCTAGGCACAAGGTCTGTGGCATGCACTCTAAATCCCCTACAGTCATTGTTGCTGGCCTTCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCACCAGCTTCCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGCAGGCGACTGGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCTCTCTTAACCTCTCGCTATGCCAGGCTTTCTTCATCTGCTTTTGATAATAGTGGCAGAGGGGCCAACTTTCTGATGGAATTGGCTTCATATCCTAAGCTTAGTCTGAGAAATTCACTTCCAACTCCTAGATCATCCGAGCTAGCTCCTGGAAGTCAAACCTCCACACTTAGCTGGCACGGCAACGCAGAGACACCATCTGACATTTTCTTGCAGGGTTCGGTTGGTGGGACAAGCTTTGCCGGTCCCGGTCATCCTCCAGGGGAAAGTTACACAGGTGTCACTGACTCGAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCTAGAAACACAGCACCAAGTCTTGGGTTGAATAATATGATAAATTTCAACGGGACACCCATGACACAACTTTCTGCTTCATCTCATGGTGCATCACTCCATGAACTTCCAAATACCTCGTGGTGTTTCAAGGGCATTGATTCTGGTAACTGTTCGCCTGAGGTTGTCCCTGATCTAGGTCTGGGTCATATTTCACAGCCTCTGAATGGCCAGCTCCATGGTGAGTTAGATCTGTCTCAACAGGGAAGGAGGCATTTCATGGATCTAGAACAGTCCAGGGAATATGAATCTGCTCATTGGTCACTTTAA 1089 0.4793 MGSDAAATKLSSSESLNGLKFGQKIYFEDVGLATPATSLTSAAVAAGVTSSSSSSSSRKGRGGSVQPAQPPRCQVEGCMVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYARLSSSAFDNSGRGANFLMELASYPKLSLRNSLPTPRSSELAPGSQTSTLSWHGNAETPSDIFLQGSVGGTSFAGPGHPPGESYTGVTDSSCALSLLSSQTWGSRNTAPSLGLNNMINFNGTPMTQLSASSHGASLHELPNTSWCFKGIDSGNCSPEVVPDLGLGHISQPLNGQLHGELDLSQQGRRHFMDLEQSREYESAHWSL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2664g00015 362 MobiDBLite consensus disorder prediction 48 71 - -
Vium2664g00015 362 Gene3D - 63 134 IPR036893 GO:0003677|GO:0005634
Vium2664g00015 362 ProSiteProfiles Zinc finger SBP-type profile. 70 147 IPR004333 GO:0003677
Vium2664g00015 362 MobiDBLite consensus disorder prediction 48 63 - -
Vium2664g00015 362 FunFam Squamosa promoter-binding-like protein 14 64 134 - -
Vium2664g00015 362 MobiDBLite consensus disorder prediction 189 210 - -
Vium2664g00015 362 Pfam SBP domain 73 146 IPR004333 GO:0003677
Vium2664g00015 362 SUPERFAMILY SBT domain 71 152 IPR036893 GO:0003677|GO:0005634
Vium2664g00015 362 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 20 327 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2664g00015 Vium-Chr2664 125018 129307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2664g00015 19 362 SBP-box Gene Family AT2G42200 44.624 1.46e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium2664g00015 SBP 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2664g00015 - - gmx:100807165 633.254