Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2664g00012 ATGTTCCCCTTTCGAAAACTCCACGCTCAGTGCTCCTTCTTCCTTCTTAAACCCTGCCAAAACCCTAGACTTCAGAGCACGAAATCTGCTACCAAATTCGCCGGAAAAGCCACCCTAAAAGAAGCCCAAGCCGCATTGCTCGAGTACCTCCACTCCACGCGCAGCCTTAACTTCTTAGACGCCGACAACATGTGCAGAAACTCGCCCTCCTTCATCCAGGATCTCCTCGCCAAAACCCACTTGCACACGCCGCACGTGAATACCAAGCGCTCCATCTCACGCTACCTCCGCTACCACCCCATCAACGAGTTCGAGCCCTTCTTCGAGAGTGCGGGTCTCTCCCCTTCCGAGTACGCGCCCCTTCTCCCGTCTCATATGATTTACCTAAACGACGACGTTGTGCTCATGGAGAATCACAAGGCTCTCTGCAACTTCGGGGTACCCCGCACCAAGATGGGGAGGGTTTTCAAACTCGCACCTCAGGTTTTTCGGTATAAACCCGGGATCTTGATCTCGAAGCTTCAGGAATACGAAAACCTCGGTGTTTCGCGGAAGACTTTGATCAATGTGGTTGCTTCCAACCCCTGCATTTTGGTTGGGGGTGTTGATTTTGATTTTGTTAAGGTTGTCGAAATGTTGAAGAGTGTTATTGGAAAGGATTGTGATTGGATTGGAGAACATTTGTTGATTAACAAGGGTTGTTGTAATTGGAGGGTGATGTTTCATGTTTTGACTTTGCTTTCTAGGGTTTTCAACGAGAAACAATTGGATGATTTAATCACCAGTAGCCCTGGATTGATTTTTGAGGAATCTGGAGGTTGTGCGTTATCCTTGATTGGCTTTTTGCTGAAATTTGGATTGTCTGTAAACCGGGTTTGTGTCATGCTGCACGAGTTTCCGGAAATTCGGGTTGTGAAATTTTTGTCCAATTTAAGATTGTGTTTTCTGTTCTTGACAGAGATTGAGATGGAGGCTTCGGAGATTGGGAGGATTTTGCAGTCTCACTGCTTGGTGTTGGGTTCCTTCACTATAAAGAGAACGATTACTTTACTTACTAACTTGAATGTTGGAAAGAAGCGACTATGTAAAGTTGTGAAGGATGATCCTCTGGTAATGAAGAGTTGGGCTTTGGGAAGGAGGATTGAGCCTCTGGTTAACTCGTATTTGGAGTGTGAATCCAAGGCGCTGAAGAAGGAGTTCATGCTGAGCTTGGGGTACGAAGAGAACTCCAAAGCAATGAATGAGTCGATTAAGTTGTTCAGGGGTAGGGGAGCTGAGCTCCAGGAGAGACTTGACTTTATTGTTAATGCTGGGTTGGATTATGAGGTTGTCTGTAAGATGATTCGAGAGTCCCCGCGGATTCTTAGTCAGACCACGGATAGGATCAACATGAAAATTGAGTCTCTTGTGAATGAAGGATATGCAATGTCGGATTTGGCTAGTTTTCCTTCCTTCCTTTCGTATTCGGCTCAAAGGGTTAAGCTGAGGTTTTCAATGTATAATTGGCTAAAAAAGCATGGAGCTGCAGAAGCAGGGCTTGCTTTGAGCACTATAATTGCATGCTCTGATAAAGCGTTTGAGAAGATGTACGTAAATCGCCATCCCTCTGGCCTTCAAGTTTGGCGGGATTTAAAGGCACAAATTTCTTCTATGGCTTAG 1659 0.4581 MFPFRKLHAQCSFFLLKPCQNPRLQSTKSATKFAGKATLKEAQAALLEYLHSTRSLNFLDADNMCRNSPSFIQDLLAKTHLHTPHVNTKRSISRYLRYHPINEFEPFFESAGLSPSEYAPLLPSHMIYLNDDVVLMENHKALCNFGVPRTKMGRVFKLAPQVFRYKPGILISKLQEYENLGVSRKTLINVVASNPCILVGGVDFDFVKVVEMLKSVIGKDCDWIGEHLLINKGCCNWRVMFHVLTLLSRVFNEKQLDDLITSSPGLIFEESGGCALSLIGFLLKFGLSVNRVCVMLHEFPEIRVVKFLSNLRLCFLFLTEIEMEASEIGRILQSHCLVLGSFTIKRTITLLTNLNVGKKRLCKVVKDDPLVMKSWALGRRIEPLVNSYLECESKALKKEFMLSLGYEENSKAMNESIKLFRGRGAELQERLDFIVNAGLDYEVVCKMIRESPRILSQTTDRINMKIESLVNEGYAMSDLASFPSFLSYSAQRVKLRFSMYNWLKKHGAAEAGLALSTIIACSDKAFEKMYVNRHPSGLQVWRDLKAQISSMA 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2664g00012 552 PANTHER CGI-12 PROTEIN-RELATED 244 534 IPR003690 GO:0003690|GO:0006355
Vium2664g00012 552 FunFam Transcription termination factor MTEF18, mitochondrial 278 544 - -
Vium2664g00012 552 Gene3D Transcription termination factor 3, mitochondrial 86 267 IPR038538 -
Vium2664g00012 552 Gene3D Transcription termination factor 3, mitochondrial 274 544 IPR038538 -
Vium2664g00012 552 SMART mt_12 293 324 IPR003690 GO:0003690|GO:0006355
Vium2664g00012 552 SMART mt_12 188 220 IPR003690 GO:0003690|GO:0006355
Vium2664g00012 552 SMART mt_12 445 475 IPR003690 GO:0003690|GO:0006355
Vium2664g00012 552 SMART mt_12 476 509 IPR003690 GO:0003690|GO:0006355
Vium2664g00012 552 SMART mt_12 153 183 IPR003690 GO:0003690|GO:0006355
Vium2664g00012 552 Pfam mTERF 248 383 IPR003690 GO:0003690|GO:0006355
Vium2664g00012 552 Pfam mTERF 425 527 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2664g00012 Vium-Chr2664 103858 107000 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vium2664g00012 mTERF 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2664g00012 - - gmx:100807690 816.994