Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2664g00011 ATGGAAGATTTGAAGAAGAGAAAACTGGACGAAGCAGGAAACGGTGATTTTGCCTCCAAGGAAGAACTTCGCTTCCTCATTGAACCTCTTGCTAAACCCCAGCTTGTTGATCTTCTAGCTAAATTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCTGATCCTGCCCATCGAAAGCTTTTTGTTCGTGGCTTGGCATGGAATACCAATTCAGAAACTTTGCGTGCTGCATTTGAAGAGCATGGAGAAATTGAGGAAGGAGCTGTGATCTATGATAAGGTAACAGGGAAGACCCGTGGCTATGGATTTATTACTTTCAAAAATATGGAATCAACTCAGCAAGCATTGAGAGCTTCTAGCAAGTTAATTGATGGAAGATTGGCTGTCTGTAATCTAGCCTGTGAGGGTCTAAGTGGAACAAGTAGTGCTCCTGATGTTTCCCTGAGGAAGCTTTATATAGGAAGCTTATCACCAGAAGTCACAAGTGAACTGCTGCTCAACTATTTTGCGAGGCATGGTGAAATAGAAGAAGGTTCAGTTGCATACGACAGGGATACAAATGAATCACGTGGCTTTGGCTTTGTCACGTACAAGACAGCAGAAGCTGCCAAGAAGGCCATAGATGATCTTGAAAAGACTCTTGGGGGAAGGAATATAATTGTAAAATATGCTGATTCCAACAAAGGAAAAACTGGGCAGCCGCCATTTCCCTCTGGAGTGGTTCCAATGGCTGGCTTACCTATGACCACAGGCTATATGCAGCCTGGTAAAGCTCATGTAAGCTCTGGCCACCCTATAAATTACAATTACCCCCAAACTGTTGTACCGTATTCCGCATCTCCTTATCCAAACCCTCACACTGTACCTTCTCCTTATCCAACACAAGGGCAGATTCCTTACCCTCCTCTTTCTGCAAAGAAAGACCAACATGGGTTTCCGCCTATCCAACCTGTAGGAATGAACAACTACCCTTATTACTATCCCAAGCAATGA 1011 0.4352 MEDLKKRKLDEAGNGDFASKEELRFLIEPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPAHRKLFVRGLAWNTNSETLRAAFEEHGEIEEGAVIYDKVTGKTRGYGFITFKNMESTQQALRASSKLIDGRLAVCNLACEGLSGTSSAPDVSLRKLYIGSLSPEVTSELLLNYFARHGEIEEGSVAYDRDTNESRGFGFVTYKTAEAAKKAIDDLEKTLGGRNIIVKYADSNKGKTGQPPFPSGVVPMAGLPMTTGYMQPGKAHVSSGHPINYNYPQTVVPYSASPYPNPHTVPSPYPTQGQIPYPPLSAKKDQHGFPPIQPVGMNNYPYYYPKQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2664g00011 336 Coils Coil 335 336 - -
Vium2664g00011 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 223 IPR000504 GO:0003723
Vium2664g00011 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Vium2664g00011 336 Gene3D - 143 240 IPR012677 -
Vium2664g00011 336 Gene3D - 55 142 IPR012677 -
Vium2664g00011 336 SUPERFAMILY RNA-binding domain, RBD 149 247 IPR035979 GO:0003676
Vium2664g00011 336 SMART rrm1_1 65 137 IPR000504 GO:0003723
Vium2664g00011 336 SMART rrm1_1 156 228 IPR000504 GO:0003723
Vium2664g00011 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Vium2664g00011 336 MobiDBLite consensus disorder prediction 288 304 - -
Vium2664g00011 336 FunFam UBP1-associated protein 2C 142 240 - -
Vium2664g00011 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 141 IPR000504 GO:0003723
Vium2664g00011 336 SUPERFAMILY RNA-binding domain, RBD 57 141 IPR035979 GO:0003676
Vium2664g00011 336 MobiDBLite consensus disorder prediction 287 320 - -
Vium2664g00011 336 CDD RRM2_NsCP33_like 156 230 - -
Vium2664g00011 336 PANTHER GEO13361P1-RELATED 47 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2664g00011 Vium-Chr2664 94464 98846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2664g00011 147 239 C2H2 Transcription Factor Family AT2G19380 34.409 2.02e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2664g00011 K12741 - gmx:100776344 611.683