Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2663g00017 ATGAATTTCAAGAGCTTCGGGAATGAAGCTGGTGGCGACGGAGGAGGGAGGCCGGTGGGGAACTTCTCCCTCACGCGGCAGCCGTCGGTGTACTCGCTGACGTTCGACGAGTTCATGAACAGCATGGGAGGTTCCGGGAAGGACTTTGGCTCCATGAACATGGACGAGTTGCTCAAGAACATTTGGACGGCGGAGGAGGTTCAGACAATGGCTTCGGCGGGCGTTGCCACCGAGGACGTAGGAGCCGGCGTCAGCCATTTGCAACGGCAGGGGTCGCTGACACTGCCGCGAACTCTGAGCCAGAAGACAGTGGATGAGGTTTGGAAGGACATTTCGAAGGATTACGGTGGGCACGGAGGGCCCAATCTTGCACAGACGCCGAGACAGCCCACTCTGGGAGAGATGACTTTGGAGGAGTTTCTGGTCAGAGCTGGTGTTGTTAGAGAAGATGCGAAGCCAAACGACGGCGTTTTCATGGATCTGGCTCGTGCGGGGAATAACAACGGTTTGGGGTTTGGGTTCCAGCAGATGAACAAGGTTTCTACTGCTACCGGTTTGATGGGTAACCGGTTGAACAATGATCCACTGGTGGGTCTTCAGTCTTCTGCCAATTTGCCTTTGAGTGTTAATGGGGTGAGATCGTCCAGTCAGCAGCCACAGATGCAGAGTCCACAGTCTCAGCAACAGCATCAGCAGCAGATATTTCCTAAGCAGAGTCCTATGTCTTATGCAGCTGCTCAGATGCCCCAGGGAATGGTTAGAGGTGGGATTGTGGGACTCGGTGGTGATCAGGGTTTGAGCGTGCAAGGTGGAGGGATTGGTAGGGTTGGTTTGGCACCTGGGTCAGTTCATGTTACTACTGGGTCTCCTGCTGCTAACCAAATATCCGGTGATAAGATGACCAAGAGCAATGGTGATACCTCGTCTGTCTCACCGGTTCCTTATGTCTTTAACGGAGGCATGCGGGGGAGGAAGACTGGAGGAGCTGTGGAGAAGGTGATAGAGAGGAGGCAGAGAAGGATGATAAAGAACAGAGAGTCAGCTGCCAGGTCACGGGCACGCAAGCAGGCTTATACCATGGAATTGGAAGCAGAAGTTGCAAAGTTAAAAGAAGAGAACCAAGAACTTGTGAAAAAACAGGCTGAAATCATGGAAATTCAGAAAAATCAAGGTTAA 1176 0.5255 MNFKSFGNEAGGDGGGRPVGNFSLTRQPSVYSLTFDEFMNSMGGSGKDFGSMNMDELLKNIWTAEEVQTMASAGVATEDVGAGVSHLQRQGSLTLPRTLSQKTVDEVWKDISKDYGGHGGPNLAQTPRQPTLGEMTLEEFLVRAGVVREDAKPNDGVFMDLARAGNNNGLGFGFQQMNKVSTATGLMGNRLNNDPLVGLQSSANLPLSVNGVRSSSQQPQMQSPQSQQQHQQQIFPKQSPMSYAAAQMPQGMVRGGIVGLGGDQGLSVQGGGIGRVGLAPGSVHVTTGSPAANQISGDKMTKSNGDTSSVSPVPYVFNGGMRGRKTGGAVEKVIERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELVKKQAEIMEIQKNQG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2663g00017 391 SMART brlzneu 332 391 IPR004827 GO:0003700|GO:0006355
Vium2663g00017 391 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 334 385 IPR004827 GO:0003700|GO:0006355
Vium2663g00017 391 CDD bZIP_plant_BZIP46 336 390 - -
Vium2663g00017 391 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 24 381 IPR043452 GO:0003700|GO:0045893
Vium2663g00017 391 SUPERFAMILY Leucine zipper domain 336 383 IPR046347 GO:0003700|GO:0006355
Vium2663g00017 391 Gene3D - 334 390 - -
Vium2663g00017 391 Pfam bZIP transcription factor 336 385 IPR004827 GO:0003700|GO:0006355
Vium2663g00017 391 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 5 334 391 - -
Vium2663g00017 391 MobiDBLite consensus disorder prediction 288 314 - -
Vium2663g00017 391 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 339 354 IPR004827 GO:0003700|GO:0006355
Vium2663g00017 391 MobiDBLite consensus disorder prediction 207 238 - -
Vium2663g00017 391 MobiDBLite consensus disorder prediction 288 322 - -
Vium2663g00017 391 MobiDBLite consensus disorder prediction 1 23 - -
Vium2663g00017 391 Coils Coil 352 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2663g00017 Vium-Chr2663 160997 163915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2663g00017 24 368 bZIP Transcription Factor Family AT1G45249 51.989 8.56e-88 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium2663g00017 bZIP_1 7e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2663g00017 K14432 - gmx:100819313 595.89