Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2663g00011 ATGGACACTGTGGAGCAGTTAAAGCTGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGATGGACATCACGACCATGATGATGCAACACCTCCCTCAATTCTCTGAACCCTATTGTGACACCGACACCATGGATGGTTTTCATCCCCAAGAAGACTTCTACAGTAACAACAACAATATACGCAGTGGTAGCACCATGCCACTGGCAGATTTACTAGATAATAACCCTCCCAGCCACTTACCTTGGTCCTCTTACTCATTCACGCACTTAATACCATCACCCACATCCTCCGCTATAATCTCTTTCTCCGACAACAGCAACAACCCTACCCCAATAATGCTTCAACAAACCCCAACCGAGGGTGCAACTGCAACTGCAAACCCTTACGGTGAGAAGCGGAGCTCCATGGCGGCGATGAGGGAGATGATATTCAGGATGGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGGCGCCGAAGCGGAGGAACGTGAAGATTTCGAAGGACCCTCAGAGTGTGGCAGCGCGGCACCGCAGAGAGAGGATCAGCGAGAGGATAAGGATCCTGCAGAGACTGGTCCCTGGAGGAACCAAGATGGACACCGCGTCGATGTTGGATGAGGCAATTCACTACGTCAAATTTCTGAAAACGCAGGTTCAGTCGCTGGAACGCGCTTCTGCTAACAATATTAGGCCCCTTGTCGGTGTTAATGCACCAGGGATAGGGTTTCCTGTTGCTATGTCTGGTTCTATTAGGACTGCTACCACTTCCGGTTCCAATTTCACCCCTTATTTTCCTCTGCCTAATACCTATGATTAA 825 0.5079 MDTVEQLKLEEEEEQQQQQMDITTMMMQHLPQFSEPYCDTDTMDGFHPQEDFYSNNNNIRSGSTMPLADLLDNNPPSHLPWSSYSFTHLIPSPTSSAIISFSDNSNNPTPIMLQQTPTEGATATANPYGEKRSSMAAMREMIFRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVQSLERASANNIRPLVGVNAPGIGFPVAMSGSIRTATTSGSNFTPYFPLPNTYD 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2663g00011 274 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 251 IPR045843 GO:0003700|GO:0006355
Vium2663g00011 274 Pfam Helix-loop-helix DNA-binding domain 178 217 IPR011598 GO:0046983
Vium2663g00011 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 226 IPR036638 GO:0046983
Vium2663g00011 274 Gene3D - 167 234 IPR036638 GO:0046983
Vium2663g00011 274 FunFam BHLH transcription factor 171 234 - -
Vium2663g00011 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Vium2663g00011 274 CDD bHLH_AtIND_like 169 225 - -
Vium2663g00011 274 SMART finulus 174 223 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2663g00011 Vium-Chr2663 125759 127107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2663g00011 133 231 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 86.869 7.26e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2663g00011 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2663g00011 - - vum:124831293 503.442