Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2663g00008 ATGGACACTGTGGAGCAGTTAAAGCTGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGATGGACATCACGACCATGATGATGCAACACCTCCCTCAATTCTCTGAACCCTATTGTGACACCGACACCATGGATGGTTTTCATCCCCAAGAAGACTTCTACAGTAACAACAACAATATACGCAGTGGTAGCACCATGCCACTGGCAGATTTACTAGATAATAACCCTCCCAGCCACTTACCTTGGTCCTCTTACTCATTCACGCACTTAATACCATCACCCACATCCTCCGCTATAATCTCTTTCTCCGTCAACAGCAACAACCCTACCCCAATAATGCTTCAACAAACCCCAACCGAGGGTGCAACTGCAACTGCAAACCCTTACGGTGAGAAGCGGAGCTCCATGGCGGCGATGAGGGAGATGATATTCAGGATGGCGGCGATGCAGCCGATACACATAGACCCGGAGTCGGTGAAGGCGCCGAAGAGGAGGAACGTGAAGATTTCGAAGGACCCTCAGAGTGTGGCAGCGCGGCACCGCAGAGAGAGGATCAGCGAGAGGATAAGGATCCTGCAGAGACTGGTCCCTGGAGGAACCAAGATGGACACCGCGTCGATGTTGGATGAGGCAATTCACTACGTCAAATTTCTGAAAACGCAGGTTGGGGGAGAGGGAGCAATGTGCAAGATGAATGCAGAAAGAAATGATGGTGGTGGTGCTTGGAACATCTGTACGGCCATAATGGGAGGGTTTCCGAGGCTTGGAAAAGTTGAAGACGACAAAGTGTTGACACGGTGTAAAAGAGGATGA 810 0.5111 MDTVEQLKLEEEEEQQQQQMDITTMMMQHLPQFSEPYCDTDTMDGFHPQEDFYSNNNNIRSGSTMPLADLLDNNPPSHLPWSSYSFTHLIPSPTSSAIISFSVNSNNPTPIMLQQTPTEGATATANPYGEKRSSMAAMREMIFRMAAMQPIHIDPESVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVGGEGAMCKMNAERNDGGGAWNICTAIMGGFPRLGKVEDDKVLTRCKRG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2663g00008 269 Gene3D - 164 224 IPR036638 GO:0046983
Vium2663g00008 269 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 18 221 IPR045843 GO:0003700|GO:0006355
Vium2663g00008 269 Pfam Helix-loop-helix DNA-binding domain 178 217 IPR011598 GO:0046983
Vium2663g00008 269 FunFam BHLH transcription factor 171 234 - -
Vium2663g00008 269 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 168 217 IPR011598 GO:0046983
Vium2663g00008 269 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 222 IPR036638 GO:0046983
Vium2663g00008 269 SMART finulus 174 223 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2663g00008 Vium-Chr2663 122924 124957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2663g00008 133 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 75.424 1.35e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium2663g00008 HLH 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2663g00008 - - vum:124831293 400.208