Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2663g00006 ATGCAAGGGCAGAGAGGTACAGTTGGTCCAATGCCAGAAACCTTAGAATTTGATTGTGGCTCTACGCCAGGTAATTCGACTGTGGATCAGCAGATTTGCTGGAATAATGTGAATCCTGCAGAAAATCAAATACCTGATTATATACTTTCTCCTGGTAATATGAACTCACCTTATGTGAATTCCATTGATCACGAATGGCAAAATTTGAGTGGATGGAGCTTAGGGGAGCCAAGTTCTAGCAATACCCCAAATGAGATTAACAATAATGAGCCAAAACGAGAAGTTGGATGGACATCAACCATTACTGCTGGTGCGTTGCCTGGTGCAAGGCTAGAAGAAAGGCGCCTTGAACCAACCAATACACTTTCTCTAGACAATGATAACACAAGTGCTGTGTACATGCGCAGTCCCGAGTCTCGTTTAATGTCCCAGAATCTCAACCTAAATGCAGGTTTAGCGGATAGTGGCGATGATAATAGTCAACATCTGGAGCTCCCTAACTTACACATGTCTAGTGGGTCATCAAATGAGCGCTTGCCATCTAATGTTGGATCTGGTTCATTTTTGCTTCCTTCTGCAAATAGTGGCTTCCTGGTAGAAGGTTCTGATGGTAGGCCAAGTTCTCTTGATACTCGACGAGTCTCTTGTAAAAGAAAGGCTGTTGAAGGAAATAATGGACAATCTTCAGATGCTGGAAGTTCTAGCTACAATCAGCATGCAGATGGTAGTGTTTGGCATGCGATTCCTACTCAGGATAATGCTGGAAGCAGTTCAAACAGAGCTGTATCCTCAGAGCAGGTGAATGCAAGACTTGGCCTGGGAATGGGGAATGAAGCATCTGAAAACGTTCCTGATTCAAACATTGCAGGAAGCTCAGAAAGCTTTCACAGGAATTTCCGGTTGAGGTTAAATCCTTCGAGTCAACAAAGTTCTGTTCCTCCCGCAGCATTCTCAACTGGGAGCACAATTAGGCAGTCTGGTGTTTCTTCATCCTCTCAAGCATCACAAAGGTTTCATTCCGTTGATAATTCTCTGAACTTGAGATCAGCTCCACCAATAGATAACGTGGTTCCTCAAAGCCAGCCACTTGTAATCCATGTTCCTGCTTTGCCTAGGAATAGGCAGTCGTTTAGATGGAATGGTGGTTCTAGCTCAAGAAATATCCATGCATCAAACCCAGTTATATGTGCCGACAGAGACCAAGAAGATGCAAGCTCAAGGCGAATGTCTAGAAATATTTTGGAGCATCCTGTCTTTGTACCTGCAACTGATTTAAGAAATTTGGTTCAAAATCCAACAGTTAGAGCTTCAAGTTCAAGTAGTGAAAATTTAAGTATTCCAGGAAACGTCTCTTCTTCATCACGGACTGGATCCAATCCAGCTACCAACCCCTCTCCTGCCTCAAATTGGGTATCTCGTCCTAATCCTCCACAACATCCACGGAGGCTATCTGAATATGTCCGTCGGTCCTTGTTTTCTCCTGGTTCTGATCCTATTGGAAATCCAAGCAATGCTTATTCTTCCTTGCGTTCTGCTCTTTCAACCTCTGAGCCAAGGCCATTATCATCTGGGACTGGGGCAAATCCAAGATCATCTCCATGGTTGGATAGGCAAGTGGAAAGTGAATTTGGAATTCCTTATTCACTGCGTGCTCTGGATGTTGCAAGTGATGGGAGTAGTAGACTAGTATCTGAGCTCCGCAATGTGTTGGGCATTATGCGTAGAGGTGGGAATGTGCGATTCGAGGATGTTGTGATCCTTGATCATCAGTCGTTTCTTTCTGGAATAGCTGATGTTCATGATCGACACAGAGATATGCGACTTGATGTTGATAACATGTCTTACGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGAAATGTGAGTACTGGATTGAGTGAGGAAGCCGTATTGAAACTCTTGAAACAGAAAAAGCACTCGGTTGAAAGAGAATCTCCGATTGATGCAGAACCCTGTTGTGTTTGTCAGGAAGATTATGGTGATGGAGATGATATGGGAACGCTTGACTGCGGCCATGATTTCCATAGTGACTGTATCAAACAGTGGCTAATGCATAAGAATCTGTGTCCTATTTGTAAGACAACAGGCTTGGCAACATGA 2121 0.4389 MQGQRGTVGPMPETLEFDCGSTPGNSTVDQQICWNNVNPAENQIPDYILSPGNMNSPYVNSIDHEWQNLSGWSLGEPSSSNTPNEINNNEPKREVGWTSTITAGALPGARLEERRLEPTNTLSLDNDNTSAVYMRSPESRLMSQNLNLNAGLADSGDDNSQHLELPNLHMSSGSSNERLPSNVGSGSFLLPSANSGFLVEGSDGRPSSLDTRRVSCKRKAVEGNNGQSSDAGSSSYNQHADGSVWHAIPTQDNAGSSSNRAVSSEQVNARLGLGMGNEASENVPDSNIAGSSESFHRNFRLRLNPSSQQSSVPPAAFSTGSTIRQSGVSSSSQASQRFHSVDNSLNLRSAPPIDNVVPQSQPLVIHVPALPRNRQSFRWNGGSSSRNIHASNPVICADRDQEDASSRRMSRNILEHPVFVPATDLRNLVQNPTVRASSSSSENLSIPGNVSSSSRTGSNPATNPSPASNWVSRPNPPQHPRRLSEYVRRSLFSPGSDPIGNPSNAYSSLRSALSTSEPRPLSSGTGANPRSSPWLDRQVESEFGIPYSLRALDVASDGSSRLVSELRNVLGIMRRGGNVRFEDVVILDHQSFLSGIADVHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEEAVLKLLKQKKHSVERESPIDAEPCCVCQEDYGDGDDMGTLDCGHDFHSDCIKQWLMHKNLCPICKTTGLAT 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2663g00006 706 MobiDBLite consensus disorder prediction 432 535 - -
Vium2663g00006 706 Pfam Ring finger domain 659 700 IPR001841 -
Vium2663g00006 706 MobiDBLite consensus disorder prediction 73 92 - -
Vium2663g00006 706 ProSiteProfiles Zinc finger RING-type profile. 659 700 IPR001841 -
Vium2663g00006 706 SUPERFAMILY RING/U-box 647 702 - -
Vium2663g00006 706 MobiDBLite consensus disorder prediction 221 240 - -
Vium2663g00006 706 MobiDBLite consensus disorder prediction 496 535 - -
Vium2663g00006 706 FunFam E3 ubiquitin-protein ligase MBR2 627 704 - -
Vium2663g00006 706 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 167 704 IPR045191 GO:0061630
Vium2663g00006 706 MobiDBLite consensus disorder prediction 432 475 - -
Vium2663g00006 706 SMART ring_2 659 699 IPR001841 -
Vium2663g00006 706 MobiDBLite consensus disorder prediction 304 339 - -
Vium2663g00006 706 MobiDBLite consensus disorder prediction 199 240 - -
Vium2663g00006 706 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 703 IPR013083 -
Vium2663g00006 706 MobiDBLite consensus disorder prediction 149 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2663g00006 Vium-Chr2663 61056 67433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2663g00006 1 706 C3H Transcription Factor Family AT2G15530 32.976 4.37e-77 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2663g00006 - - var:108341275 1206.82