Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2663g00003 ATGATGAATTCCCCCGTCGTTCGAATCGTTTCAGAATGTTTTGTCAAGCCGTCGGGCCAAGCTCAAGAATCAGATCGAATATGCAATTTAACACCTTGGGATATTGCTATGCTGTCTTTGCACCACATCCAGAAGGGTCTACTCTTCCAGAAGCCAAAAACACTTGTTGATCAGCATCATTTCATACAGAATCTGTTGGAGAAACTCAAACACTCTCTTTCTCTAGCCCTCTTCCATTTCTATCCGTTGTCCGGTCGCCTTGTCACCCACAAAACCGAAGACCCTTCATCTTATACTATTTTTGTTGATTGCAGCAACAGCAGAGGAGCTAGATTCATCCATGCAACTTTGGATATGACAATATCTGACATCCTCCCCCCCGTTGATGTCCCTCCTATTGTGCACTCATTCTTTGACCTCCACAAAGCAGTCAACCATGATGGTCATACCATGCCACTCTTGTCGATTAAAGTTACTGAACTAGTGGACGGTGTTTTCATAGGTTGTTCCATGAACCACAATATCGCTGATGGCACTTCTTATTGGAATTTCTTCAATGCATGGTCTGAGATCTTTCAAGCTCAAGCTGAAGGGAATGAACACGATGTTCCGATTTCATGTCATCCTATTCATAACCGGTGGTTTCCAGATGGTTGCGGCCCATTAATCAACCTTCCCTTCAAACATCACGACGAGTTTATTAGCAGATTTGAAGCACCCCAGCTGAGGGAGAGAATCTTCCATTTTTCAGCAGAGTCTATTGCAAAACTGAAAGCAAGGGCGAATTCAGAGTCCAAAACCACACAAATCTCTTCGCTCCAATCCTTATCAGCTCATGTTTGGAGATGCGTAACACGGGCACGCCAGATGGCACACGGTGAGAGAACAAGTTGCAAATTGGCCATAAATAACCGGTCAAGAATGGAACCGCCTCTGCCGGCCGAGTACTTTGGAAGTGCTGTTGGTGTGGTGAGCGCAGAGAGCACGGTAGGGGAATTGCTGGAGAATGATCTAGGATGGGCTGCACGGAAGGTGCTCGTGGCTGTTGACAACCATAACGACAGAGTGGTGAGAGACATGGTGAAAGAGTGGTTGCAGCATCCAGTGATTTACCAACTTGGTGTGATCGTTGACTCCAGTTGCGTGATGATATCAAGTTCTCCCAGGTTCAATGTGTATGGAAATGAATTCGGAATGGGAAAAGCGGTGGCAGTTCTGAGTGGGTATGCCAACAAATTTGACGGAAACGTGATCGCACATCCAGGACGTGAAGGAGGAGGAAGCATAGATTTTGAACTCTCCCTTTCACCTCATGTAATGTGTGCACTGGAATCAAATCACGAGTTCATGGAAGCTGTTTCCGTGCCCAATATTCTGCACTACCCAGTTCGTTGA 1395 0.4602 MMNSPVVRIVSECFVKPSGQAQESDRICNLTPWDIAMLSLHHIQKGLLFQKPKTLVDQHHFIQNLLEKLKHSLSLALFHFYPLSGRLVTHKTEDPSSYTIFVDCSNSRGARFIHATLDMTISDILPPVDVPPIVHSFFDLHKAVNHDGHTMPLLSIKVTELVDGVFIGCSMNHNIADGTSYWNFFNAWSEIFQAQAEGNEHDVPISCHPIHNRWFPDGCGPLINLPFKHHDEFISRFEAPQLRERIFHFSAESIAKLKARANSESKTTQISSLQSLSAHVWRCVTRARQMAHGERTSCKLAINNRSRMEPPLPAEYFGSAVGVVSAESTVGELLENDLGWAARKVLVAVDNHNDRVVRDMVKEWLQHPVIYQLGVIVDSSCVMISSSPRFNVYGNEFGMGKAVAVLSGYANKFDGNVIAHPGREGGGSIDFELSLSPHVMCALESNHEFMEAVSVPNILHYPVR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2663g00003 464 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 8 451 - -
Vium2663g00003 464 Pfam Transferase family 7 450 - -
Vium2663g00003 464 FunFam Tryptamine hydroxycinnamoyl transferase 229 447 - -
Vium2663g00003 464 Gene3D - 6 221 IPR023213 -
Vium2663g00003 464 Gene3D - 231 446 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2663g00003 Vium-Chr2663 15052 16757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2663g00003 67 444 Monolignol Biosynthesis Gene Families AT5G48930 27.387 5.84e-31 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2663g00003 - - vum:124831304 733.021