Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2663g00001 ATGGGTACTCCTGCCCTACGACGCATTTCGGAGTGTTTTGTGAAGCCTCACCGCTGCAACCACTTCTCCGATCAAATCTGCAATTTAACACCTTGGGATATTGCCATGTTGTCTGTGCACTATATTCAGAAGGGTCTACTCTTCAAGAAGCCTGCAACCCTGCTTCATGAAAACGATTTCATACAAAATCTGTTGGAGAACCTCAAGCACTCTCTTTCTCTCACCCTCTCCCATTTTTATCCATTGTCTGGTCGCCTTGTCACTCACAAAACCCAAAACCCTCCCTCTTATATTGTTTCTGTTGATTGCAACAACAGTGATGGAGCTAGATTCATTCATGCAACTCTGGATATCACCATAGCTGATATCCTCTCCCCCCTTGATGTCCCACCGATTGTTCAATCATTCTTTGACCACCACAAAGCAATCAACCATGACGGTCACTCCATGCCGCTGTTGTCCATCCAAGTCACTGAACTAGTGGACGGTGTTTTCATAGGTTGTTCCATGAACCATGTTATTGGCGATGGAACTTCTTATTGGAATTTCTTCAATTCATGGTCTCAGATCTTTCTAGCACAATCTCAATCTGAAAATGTTCCCATCTCACGCCAACCCATTCACAATCGTTGGTTTCCAAATAATTGTAGACCACCGATCTCTCTTCCTTTCAAACATCATGACGAGTTTATAGAGAGATCTGAAAAACCCCTCCTCCTGAGAGAGAGATTTTTCCACTTTTCAGCAGAGTCTATTGCCAAACTGAAAGCAAAGGCCAATTCAGAATCCAATACCACAACAATATCTTCCTTCCAGTCATTATCAGCACTTGTTTGGAGGTCCATAACTCGTGCGCGCTCCATACCGTCTGACCAAAAAACAACTTGCAGATTAGCAGCGAGCAATCGATCAAGAATGGAGCCGCCTCTGCCTGAAGAATACTTTGGAAACTGCCTTCATGCAGTGAATGCAGAAACGACAACAGGGGAATTGCTTGAGAATGATCTAGGATGGGCGGCATGGAAGTTGCATGTGGCTGTTAAAAACCTTGACGATAGAGTGGTGTTGCAGTATCTCGGAGAGTGGTTAGATTCTCCTGTGATATATCAAATGGGTCGTTTCTTTGAACCATATTGTGTGATGATGGGTAGCTCCCCGAGGTTCAATATGTATGGGAGTGAATTTGGAATGGGGAAAGCGGTGGCTGCTAGAAGTGGCTATGCAAATAAATTTGATGGGAAAGTGTCATCATACCCAGGGCGTGAAGGAGGAGGAAGCATTGATTTGGAAGTTTGCCTTTTCTCACATACAATGAGTGCCTTGGAATCAGACAAGGAATTCATGCATGCAGTTTCTGAGTTCAATCCCCTACTGTTCTAG 1380 0.442 MGTPALRRISECFVKPHRCNHFSDQICNLTPWDIAMLSVHYIQKGLLFKKPATLLHENDFIQNLLENLKHSLSLTLSHFYPLSGRLVTHKTQNPPSYIVSVDCNNSDGARFIHATLDITIADILSPLDVPPIVQSFFDHHKAINHDGHSMPLLSIQVTELVDGVFIGCSMNHVIGDGTSYWNFFNSWSQIFLAQSQSENVPISRQPIHNRWFPNNCRPPISLPFKHHDEFIERSEKPLLLRERFFHFSAESIAKLKAKANSESNTTTISSFQSLSALVWRSITRARSIPSDQKTTCRLAASNRSRMEPPLPEEYFGNCLHAVNAETTTGELLENDLGWAAWKLHVAVKNLDDRVVLQYLGEWLDSPVIYQMGRFFEPYCVMMGSSPRFNMYGSEFGMGKAVAARSGYANKFDGKVSSYPGREGGGSIDLEVCLFSHTMSALESDKEFMHAVSEFNPLLF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2663g00001 459 Gene3D - 227 443 IPR023213 -
Vium2663g00001 459 FunFam Tryptamine hydroxycinnamoyl transferase 226 445 - -
Vium2663g00001 459 Pfam Transferase family 20 448 - -
Vium2663g00001 459 Gene3D - 8 221 IPR023213 -
Vium2663g00001 459 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 9 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2663g00001 Vium-Chr2663 12 1525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2663g00001 68 442 Monolignol Biosynthesis Gene Families AT5G48930 27.750 6.09e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2663g00001 - - vra:106761257 789.26