Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2661g00003 ATGATTCCCCTCCAATGCAACAACATGGGTGGTTACTCCGCCGCCATCGCCGTCATCACCACCATCCTCTTCTTGTTCCCGCCGCCGACTTCTCAGGCCCAGATTCTCAACACAGAAGCTCACGTTTTCGGCCCCTTCAACCAATCATACTTCAACACGTTCGCGGTGTTGCCCAGCGCCGCCATCAACCTTGAAGCGCTCCAAGTAACACCAGACAGCACAGGCAACGTGTCCCTGACCAACCGCTCCGGCAGAATCTTCTTCAACAAACCCTTCACTCTCTGGAACGACCAAGATAGCCTCGACGAAAAGCCCGTGTCTTTCAACACTTCCTTTCTGATAAACGTATACCGTCCCAAAAACGAAACTCCCGGCGAGGGCATCACCTTCTTCATCGCCCCTTCTACCTCCGCCCCCCCTCCCAACAGCTACGGCCAGTTTCTCGGCCTCACAAACGCCTCCAACGATGGCAACCGCACCAACCAAATCCTCGCCGTCGAACTTGACACCGTGAAGCAGGACTTTGACCCCGACGACAACCATCTCGGCCTGGACGTTAACGGCGTGAGGTCCAACGTCACTGTGTCTCTCACTCCCTTGGGGTTCGAGATCGTGCCCAACGTCACGCGCTTCCACGTGCTGTGGGTGGAGTATGACGGTGACCGGAAGGTGATCGACGTGTACATCGCGGAGCAGCCTGATAAGGATGCACCCATAGTGCCGAAACCGGCTAAGCCGGTGTTGAGTTCAGGTATCGATCTGAAACAAGTGGTGAACAGGGTTTCTTATTTTGGGTTCTCTGCTTCGACCGGTAACAACGTTGAACTAAACTGCGTGCTGAGGTGGAACATTTCTATTGAAGTTTTTCCCAAAAAAAAGGGGATCGGAAATGCGTTGAAGATTGGGTTGGGTGTCGGAGTGCCTGTGGTCGTTCTTCTTGTAGCCGGTGTCGTAGGGTGGGTTTATTGGTTGTGGAGAAAGCAGAGAGAAAGCGAGACTCAGATTTTGGGAACTCTCAAGAGTTTACCTGGAACTCCCAGAGAATTTAGGTATCAAGAATTGAAGAAAGCCACTAATAATTTCGATGAGAAGCACAAGCTTGGACAAGGTGGATACGGCGTCGTATACAGAGGAACACTTCCGAAAGAGAAGTTGGAAGTAGCCGTCAAAATGTTCTCCAGAGATAAGATGAAAAGCACAGATGATTTCTTGTCTGAACTCACCATCATCAATCGCCTTCGTCACAAAAACCTTGTTCGCTTACTCGGGTGGTGCCACAGAAATGGGGTGTTGCTGTTAGTGTACGATTACATGCCTAATGGAAGCTTGGACAACCACATTTTCCGTGAGGAGGGGAGCAACACTACGGCACTGAGTTGGCCTTTGAGGTACAAGATCATAGCAGGGGTGGCTTCTGCATTGAACTACCTGCACAACGAGTATGATCAGAAAGTGGTCCACAGAGACCTTAAGGCCAGCAACATCATGCTGGACTCAGACTTCAATGCTCGTTTAGGTGACTTCGGCTTGGCTCGTGCGTTGGAGAATGATAAAACATCGTATGCAGAGTTGGAAGGAGTGCATGGCACCATGGGGTACATTGCACCTGAGTGCTTCCACACTGGGAGGGCCACAAGGGAATCTGATGTTTATGGGTTTGGAGCAGTGGTCCTTGAGGTTGTGTGTGGCCAAAGGCCATGGACCAAGAATGAGGGGTATGAGTGCTTGGTGGATTGGGTATGGCACCTGCATCGTGAGCAAAGGATACTTGATGCAGTGGATCCAAGACTTGGGAATGACTGTGTGGCTGAAGAGGCAGAGAGGATTCTGAAACTAGGACTAGCATGCTCTCACCCCATTGCCAGTGAAAGACCAAAGATGCAAACAATTGTTCAGATCATATCTGGTTCTGTGCCTGTGCCTCATGTTCCACCTTTCAAACCATCTTTTGTGTGGCCAGCTATGGATCTATCAAGCCTTGCAAGTGACCTCACACAAACCACAACAACCGAGTACACACCCATGACAACAACCGAGTACACACCCATGAACAGTACCACACATTCTTTGCATGTTGATTTCTCAGACAGTGGCTCTCTTGTCTAA 2106 0.5047 MIPLQCNNMGGYSAAIAVITTILFLFPPPTSQAQILNTEAHVFGPFNQSYFNTFAVLPSAAINLEALQVTPDSTGNVSLTNRSGRIFFNKPFTLWNDQDSLDEKPVSFNTSFLINVYRPKNETPGEGITFFIAPSTSAPPPNSYGQFLGLTNASNDGNRTNQILAVELDTVKQDFDPDDNHLGLDVNGVRSNVTVSLTPLGFEIVPNVTRFHVLWVEYDGDRKVIDVYIAEQPDKDAPIVPKPAKPVLSSGIDLKQVVNRVSYFGFSASTGNNVELNCVLRWNISIEVFPKKKGIGNALKIGLGVGVPVVVLLVAGVVGWVYWLWRKQRESETQILGTLKSLPGTPREFRYQELKKATNNFDEKHKLGQGGYGVVYRGTLPKEKLEVAVKMFSRDKMKSTDDFLSELTIINRLRHKNLVRLLGWCHRNGVLLLVYDYMPNGSLDNHIFREEGSNTTALSWPLRYKIIAGVASALNYLHNEYDQKVVHRDLKASNIMLDSDFNARLGDFGLARALENDKTSYAELEGVHGTMGYIAPECFHTGRATRESDVYGFGAVVLEVVCGQRPWTKNEGYECLVDWVWHLHREQRILDAVDPRLGNDCVAEEAERILKLGLACSHPIASERPKMQTIVQIISGSVPVPHVPPFKPSFVWPAMDLSSLASDLTQTTTTEYTPMTTTEYTPMNSTTHSLHVDFSDSGSLV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2661g00003 701 FunFam probable L-type lectin-domain containing receptor kinase S.5 438 639 - -
Vium2661g00003 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 485 497 IPR008271 GO:0004672|GO:0006468
Vium2661g00003 701 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 291 IPR013320 -
Vium2661g00003 701 PANTHER - 72 644 - -
Vium2661g00003 701 ProSitePatterns Legume lectins beta-chain signature. 164 170 IPR019825 -
Vium2661g00003 701 ProSiteProfiles Protein kinase domain profile. 361 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2661g00003 701 Pfam Protein kinase domain 362 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2661g00003 701 SUPERFAMILY Protein kinase-like (PK-like) 343 665 IPR011009 -
Vium2661g00003 701 FunFam probable L-type lectin-domain containing receptor kinase S.5 346 437 - -
Vium2661g00003 701 SMART serkin_6 361 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium2661g00003 701 Gene3D Phosphorylase Kinase; domain 1 346 437 - -
Vium2661g00003 701 Pfam Legume lectin domain 53 288 IPR001220 GO:0030246
Vium2661g00003 701 CDD lectin_legume_LecRK_Arcelin_ConA 51 283 IPR001220 GO:0030246
Vium2661g00003 701 CDD STKc_IRAK 367 634 - -
Vium2661g00003 701 ProSitePatterns Protein kinases ATP-binding region signature. 367 390 IPR017441 GO:0005524
Vium2661g00003 701 Gene3D - 39 296 - -
Vium2661g00003 701 Gene3D Transferase(Phosphotransferase) domain 1 438 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2661g00003 Vium-Chr2661 23339 28024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2661g00003 58 649 Receptor kinase-like Gene Family AT3G53810 39.617 6.38e-126 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vium2661g00003 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2661g00003 - - gmx:100784558 1172.92