Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium265g00011 GGGTCCTACGAATTCGCGCCACGTTTCAAATTGTCGTACGGTTCGCGTGGTTCGGGTTCTTCCGGTGAAGAGTGGAGCGAGCACGAGACTTTCGTGCTACTGGAGGTGTGGGGGGACAAGTTCCTCCAGCTCGGGAGGAACAGTTTAAGGTCCGAGGAATGGCACGAGGTTGCCGAAAAGGTTTCGGAGGAATTGAAGACAGAGAGAAGCGTGACGCAGTGTAGTAGCGTGCTGGACAAGCTGAAGAGAAAGTACAAGAAGGAGAAAACCAAAATGGATGAAATGGGGATGGGCTCTTGCAAATGGCCCTTCTTCAAGAAGATGGACATGTTGATGGCATCCTCTGCAAGGCAAGAGTATGGCCTTGCGTGTGGGGTGGATTCTGGGGAGTATGTGTTTATGAACACTAGGGTTTACTTGAACAGGTCCAATGGATTTGATGAGATGAGGGATAGTCCAGGGGAGTCTGAGAGTGATGATGATGAGGAAGAAGAGGAGTTTGGTGGTGGCGGTGCTGCTGATGAGGAGGATGAGACATCGTTCCGTGTGTTGGCGGATTCGATTCAGAAGTTTGGGAAGATTTATGAGAAGATTGAGAACAGCAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGCTGGATTTTAACAGGGAGTTGGAGCTGCAGAAGAAGCAGATTCTCGAGAGGGCGCAGGCTGAGATTGCCAAAATTCAGGACGGGGATGAGGAGGAAACCGACACTTCCACGGAGAATCTCAGTGAATGA 768 0.5052 GSYEFAPRFKLSYGSRGSGSSGEEWSEHETFVLLEVWGDKFLQLGRNSLRSEEWHEVAEKVSEELKTERSVTQCSSVLDKLKRKYKKEKTKMDEMGMGSCKWPFFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESESDDDEEEEEFGGGGAADEEDETSFRVLADSIQKFGKIYEKIENSKRQQMMELEKMRLDFNRELELQKKQILERAQAEIAKIQDGDEEETDTSTENLSE 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium265g00011 255 MobiDBLite consensus disorder prediction 144 179 - -
Vium265g00011 255 Gene3D - 25 87 - -
Vium265g00011 255 MobiDBLite consensus disorder prediction 236 255 - -
Vium265g00011 255 Pfam Myb/SANT-like DNA-binding domain 24 110 IPR044822 -
Vium265g00011 255 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 14 242 IPR044823 -
Vium265g00011 255 MobiDBLite consensus disorder prediction 153 173 - -
Vium265g00011 255 Coils Coil 195 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium265g00011 Vium-Chr265 16640 19352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium265g00011 25 245 Trihelix Transcription Factor Family AT1G54060 31.985 9.20e-20 85.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium265g00011 Myb_DNA-bind_4 1.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium265g00011 - - vum:124831447 419.468