Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium265g00008 ATGGACGACATGGAAGACGACGCAAGGTACCCCCCTAAGTCATTCTCCCTCAACCGTCAGAATCCCTCCCACCGACATAAACACCCCGCACGCGCCGCCCCTTACCACCGCCCAATGCCCACGCGCTACGACCAGCCCATGGTGGAAGTCGACGATGAAGATGATGAAAACGAACACGAAGATTTCAACGACGACAACGACGAAGGCGAAAATGGGTACGACGAAAACGACGTCGTGGGGTATCCCCGGATCCCGAAGAAGCGCAAGGTGGTAGTCGCTCCAGGGTCCTACGAATTCGCGCCACGTTTCAAATTGTCGTACGGTTCGCGTGGTTCGGGTTCTTCCGGTGAAGAGTGGAGCGAGCACGAGACTTTCGTGCTACTGGAGGTGTGGGGGGACAAGTTCCTCCAGCTCGGGAGGAACAGTTTAAGGTCCGAGGAATGGCACGAGGTTGCCGAAAAGGTTTCGGAGGAATTGAAGACAGAGAGAAGCGTGACGCAGTGTAGAAGCGTGCTGGACAAGCTGAAGAGAAAGTACAAGAAGGAGAAAACCAAAATGGATGAAATGGGGATGGGCTCTTGCAAATGGCCCTTCTTCAAGAAGATGGACATGTTGATGGCATCCTCTGCAAGGCAAGAGTATGGCCTTGCGTGTGGGGTGGATTCTGGGGAGTATGTGTTTATGAACACTAGGGTTTACTTGAACAGGTCCAATGGATTTGATGAGATGAGGGATAGTCCAGGGGAGTCTGAGAGTGATGATGATGAGGAAGAAGAGGAGTTTGGTGGTGGCGGTGCTGCTGATGAGGAGGATGAGACATCGTTCCGTGTGTTGGCGGATTCGATTCAGAAGTTTGGGAAGATTTATGAGAAGATTGAGAACAGCAAGAGGCAGCAGATGATGGAGTTGGAGAAGATGAGGCTGGATTTTAACAGGGAGTTGGAGCTGCAGAAGAAGCAGATTCTCGAGAGGGCGCAGGCTGAGATTGCCAAAATTCAGGACGGGGATGAGGAGGAAACCGACACTTCCACGGAGAATCTCAGTGAATGA 1050 0.5229 MDDMEDDARYPPKSFSLNRQNPSHRHKHPARAAPYHRPMPTRYDQPMVEVDDEDDENEHEDFNDDNDEGENGYDENDVVGYPRIPKKRKVVVAPGSYEFAPRFKLSYGSRGSGSSGEEWSEHETFVLLEVWGDKFLQLGRNSLRSEEWHEVAEKVSEELKTERSVTQCRSVLDKLKRKYKKEKTKMDEMGMGSCKWPFFKKMDMLMASSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESESDDDEEEEEFGGGGAADEEDETSFRVLADSIQKFGKIYEKIENSKRQQMMELEKMRLDFNRELELQKKQILERAQAEIAKIQDGDEEETDTSTENLSE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium265g00008 349 Gene3D - 119 181 - -
Vium265g00008 349 MobiDBLite consensus disorder prediction 238 273 - -
Vium265g00008 349 MobiDBLite consensus disorder prediction 1 80 - -
Vium265g00008 349 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 108 336 IPR044823 -
Vium265g00008 349 MobiDBLite consensus disorder prediction 48 74 - -
Vium265g00008 349 MobiDBLite consensus disorder prediction 330 349 - -
Vium265g00008 349 Coils Coil 289 331 - -
Vium265g00008 349 MobiDBLite consensus disorder prediction 247 267 - -
Vium265g00008 349 Pfam Myb/SANT-like DNA-binding domain 118 204 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium265g00008 Vium-Chr265 12869 15997 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium265g00008 119 339 Trihelix Transcription Factor Family AT1G54060 31.985 4.17e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vium265g00008 Myb_DNA-bind_4 6.4e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium265g00008 - - gmx:100790166 491.5