Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium2655g00001 ATGGCAGAGAGTTCTTCATCATTCGCTGCGTCCGCTTCTCCCACCAGGTACGACGTGTTTCTGAACTTCAGAGGGGAAGACACTCGTGAGAACTTCATTAGTCACCTTTATGCAGCGCTGGAGAGGAAGCACATTGAAACATATATTGATTACAGACTACAAAGGGGCGAAGAAATTTCACCTGCACTGCAAACCGCAATTGAAGAATCAAAGATCTATGTCCTGGTTTTCTCTGAAAACTATGCATCTTCCACGTGGTGTTTAAATGAACTGACTAAAATACTGGACTGCAAGAAGACATATGGAAGGGATGTGATACCAGTTTTCTACAAGGTGCATCCAGCAACTGTCAGAAAACAGGAAGAGAGATACAAAGAAGCGTTCGAAGAGCATGAACTGCGGTTTAAGGAAGACATGGGCAAAGTGCAAGGATGGAAGGATGCTCTAACCGAAGCTGCTGAACTCTGCGGCTGGGATTCAAACGTTATCAGGTTAGAACACATTCTTGTTGAAGAAATTATAGATGATATTTTGAAAAAACTGAATCGTTATTCCGTCAGTTATAATCAAGGAATCATCGGTATTGAAAAACATATTGAAGAAATTCGATCCTTGTTGGATCTTGAGTCACCGGATATTCGGATCATAGGAATTTATGGCATGGGAGGAATGGGAAAAAGTACAATTTCTGAACAATTATTTCACACATTGGCAGTGCAGTTTGATTCCCACAGCCTTGTTTTAGATGTTCAAGAAAAACTACAAAGAGAGGGAATACACAATATCATAGCAAAATATCGGTCTGAGCTTCTAAAGGAAGAAGCATCATCATTCACTGATTTATCATATTCCAATGAAAGGCTCAAACGAGCAAAGGTCCTCCTCATTCTTGATGATGTAACAAATTCAACTCAACTTAGAAAATTAATGGAAAGACATGATAGCTTTGGGCAAGGCAGTAGAATCATTATGACCAGTAGAGATAGACAAGTGCTTAAGAATGCTGGAGCTGATGATATCTACGAACTTCAGGAGTTGAATTTTTATGATTCTCTAAAACTTTTTAATTTACATGCTTTTAAACAAAATTCTCCAGAAGAAATTACTTACATGGACTTGTCAGTACAAGTGTTAAAATATGCAAAAGGGATTCCGTTAGCTCTCCAAATTTTGGGTTCATTGTTATATGGCAGACAAAGAGAAGCATGGGAAAGTCAGTTGCAAAACTTGGAGAAGTGCCAAGATGATGATATTTTCAATGTATTCAAGTTAAGTTATGATGGACTCCGTGAGGAGGAGAAAAATATATTTCTTGACATCGCTTGCTTTTATAGAGGACACAACGAGATTGTAGTAGCAGAAATACTAAATGAGTGTGGTTTCTCTTCTAAGATTGGAATGGATGTTCTCAAAGATAAATGACTCATATCTATCTTGGATGGTAGAATTGTGATGCACGATCTAATACAAGAAATGGGTCAAGAAATTGTTCGTAAAGAGTGTCCTCAACATCCTGGAAAACGCAGCCGATTGTTCAAGGCTGACGAAATTCATGAGATTTTAAAAAAGAACAAGGGTGTGCCCTTAAACTTCCAAAGTCTCAAGAAGCTCTGTTTCATAGATCTCTCAAACTGTTCTTCCCTTACAATATTTCCATTTGACCTTTCTGAGATTAAATTCCTAAAGAAACTTTGTCTCGGTGGTTGCTCAAAATTGGAAAATTTCCCCGAGATTGAGGACACGATGGAAGACCTAGAGGTGCTCATCTTGGACAGAACAGCCATACAGGCACTACCTTCATCCTTGTGGCGTTTGGTAGGGCTTCAAGAACTGAGTTTGAGCGGTTGCTTTAATCTTGAGATTATTCCATCTTTCATTGGAAGCCTCACCAGACTATGTAAGTTAGATCTTACCTATTGTGAATCACTTCAAACTTTTCCAAGCACAATTTTCAAATTGAAGTTGAGGAAATTTGATTTGTGTGGTTGCTTAAGGTTGAGGACCTTCCCAGAGATCACGGATCAGGTACAAACTTTTTCTCACATTAACTTAAAAGAAACGGCTATCAAAGAACTGCCTTCCTCATTCGGCAATTTGGTTAGTCTTCGATCCCTGCAGCTCAACAAATGCACGAATCTCGAATCACTCCCAGACTCCGTTGCTAATCTAAAGCATCTCTGTAAACTTGATTGTTCGGGTTGTGCCAAATTAACAGAAATCCCAAGACACATAGGTCGGTTGACGTCATTAATGGAACTGTCACTGAGTGAGAGCGGAATCGTGAACCTTCCTGTGAGCATTGCTCATCTTTCGAACTTGAAATCATTTGATTTGAGCGATTGCAAAAAGCTTGAATGCATCCCACAGATTCCACCATGTTTAAAACAACTGGTGGCATTGGATTGCACATCCATTAGAAGAGTGATGTCAAATTCTCCTGTTCGAAACCTCTCAAACTCCAAAGAGGGTGTCTTCAAATTTCATTTCACCAATGCCCAACAACTGGATTCAGGTGCTCGTGCTAACATTGAGGAGGATGCAAGGCTCAGGATGACCGACGATGCATATAGGTCTGTATTCTTCTGTTTTCCATGCACTGCAGTTCCTCATTGGTTTCCTTTTCGTGGTAATGGACCTTCAGTGAGTATAAATGAAGATTTAAGTTTCTGCAGCGATGACAGGCTCATTGGTTTCGCTTTGTGTGTTGTTTTTGAACTGTTAGATACGAATGATTTTGAAGGTAGATACGGTTCTTTTAGTTATAACCTAAAATTTGAATGTGATGATAATGGTACACAGATTATTCCAAATAATCATGTGCTAGACAACTATTTCGAATGGAATGATAAAGACAGAGTTGTCAATCAAGATCACACATTCATGTGGAAATTTAACTTGGAGTCCGTAAGGACTAGCGGCATGAGCCTTAGGCTCCGTGATGCTCGCAATTTCACTTTTGAGATCGATCCGAAACATTATGACTTTGAGTTTGAGTTGCCAGATTACGACTCCGTTGTGAACGAGTTAAAATCAGTTGTGACAATAAAAGAATGTGGAATGTGCCCTCTTTATAGAAGCGGAAGCAATGTTGGAGAGTCTTCAAGGGAAACAAAGGAAGATAGGAAGAGGAAGGCCGAAAGCTACTTAGTGGGCTAA 3156 0.3954 MAESSSSFAASASPTRYDVFLNFRGEDTRENFISHLYAALERKHIETYIDYRLQRGEEISPALQTAIEESKIYVLVFSENYASSTWCLNELTKILDCKKTYGRDVIPVFYKVHPATVRKQEERYKEAFEEHELRFKEDMGKVQGWKDALTEAAELCGWDSNVIRLEHILVEEIIDDILKKLNRYSVSYNQGIIGIEKHIEEIRSLLDLESPDIRIIGIYGMGGMGKSTISEQLFHTLAVQFDSHSLVLDVQEKLQREGIHNIIAKYRSELLKEEASSFTDLSYSNERLKRAKVLLILDDVTNSTQLRKLMERHDSFGQGSRIIMTSRDRQVLKNAGADDIYELQELNFYDSLKLFNLHAFKQNSPEEITYMDLSVQVLKYAKGIPLALQILGSLLYGRQREAWESQLQNLEKCQDDDIFNVFKLSYDGLREEEKNIFLDIACFYRGHNEIVVAEILNECGFSSKIGMDVLKDKXLISILDGRIVMHDLIQEMGQEIVRKECPQHPGKRSRLFKADEIHEILKKNKGVPLNFQSLKKLCFIDLSNCSSLTIFPFDLSEIKFLKKLCLGGCSKLENFPEIEDTMEDLEVLILDRTAIQALPSSLWRLVGLQELSLSGCFNLEIIPSFIGSLTRLCKLDLTYCESLQTFPSTIFKLKLRKFDLCGCLRLRTFPEITDQVQTFSHINLKETAIKELPSSFGNLVSLRSLQLNKCTNLESLPDSVANLKHLCKLDCSGCAKLTEIPRHIGRLTSLMELSLSESGIVNLPVSIAHLSNLKSFDLSDCKKLECIPQIPPCLKQLVALDCTSIRRVMSNSPVRNLSNSKEGVFKFHFTNAQQLDSGARANIEEDARLRMTDDAYRSVFFCFPCTAVPHWFPFRGNGPSVSINEDLSFCSDDRLIGFALCVVFELLDTNDFEGRYGSFSYNLKFECDDNGTQIIPNNHVLDNYFEWNDKDRVVNQDHTFMWKFNLESVRTSGMSLRLRDARNFTFEIDPKHYDFEFELPDYDSVVNELKSVVTIKECGMCPLYRSGSNVGESSRETKEDRKRKAESYLVG 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium2655g00001 1051 PRINTS Disease resistance protein signature 768 784 - -
Vium2655g00001 1051 PRINTS Disease resistance protein signature 381 395 - -
Vium2655g00001 1051 PRINTS Disease resistance protein signature 215 230 - -
Vium2655g00001 1051 PRINTS Disease resistance protein signature 287 301 - -
Vium2655g00001 1051 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Vium2655g00001 1051 Gene3D - 14 185 IPR035897 -
Vium2655g00001 1051 Gene3D - 186 340 IPR027417 -
Vium2655g00001 1051 MobiDBLite consensus disorder prediction 1032 1051 - -
Vium2655g00001 1051 Pfam C-JID domain 863 1026 IPR045344 -
Vium2655g00001 1051 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 158 IPR035897 -
Vium2655g00001 1051 Gene3D Ribonuclease Inhibitor 519 677 IPR032675 -
Vium2655g00001 1051 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Vium2655g00001 1051 Gene3D - 346 430 IPR042197 -
Vium2655g00001 1051 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 440 IPR027417 -
Vium2655g00001 1051 Pfam NB-ARC domain 196 414 IPR002182 GO:0043531
Vium2655g00001 1051 Pfam TIR domain 17 187 IPR000157 GO:0007165
Vium2655g00001 1051 SUPERFAMILY L domain-like 484 805 - -
Vium2655g00001 1051 MobiDBLite consensus disorder prediction 1029 1051 - -
Vium2655g00001 1051 SMART till_3 16 155 IPR000157 GO:0007165
Vium2655g00001 1051 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 719 IPR044974 GO:0006952
Vium2655g00001 1051 Gene3D Ribonuclease Inhibitor 678 837 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium2655g00001 Vium-Chr2655 3867 14496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium2655g00001 12 783 WRKY Transcription Factor Family AT4G12020 30.641 5.96e-87 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium2655g00001 - - vum:124831276 2069.66